Gene Selection

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Documentation for package ‘DFP’ version 1.66.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

DFP-package	DFP Package Overview
calculateDiscriminantFuzzyPattern	Calculates the Discriminant Fuzzy Pattern to select significative genes
calculateFuzzyPatterns	Calculates a Fuzzy Pattern for each category of the samples
calculateMembershipFunctions	Calculates Membership Functions
computeMembership-method	Class "HighExpressionLevel"
computeMembership-method	Class "LowExpressionLevel"
computeMembership-method	Class "MediumExpressionLevel"
DFP	DFP Package Overview
discretizeExpressionValues	Function to discretize gene expression data
discriminantFuzzyPattern	Discriminant Fuzzy Pattern to filter genes
ExpressionLevel-class	Class "ExpressionLevel"
HighExpressionLevel-class	Class "HighExpressionLevel"
LowExpressionLevel-class	Class "LowExpressionLevel"
MediumExpressionLevel-class	Class "MediumExpressionLevel"
plotDiscriminantFuzzyPattern	Plots the Discriminant Fuzzy Pattern of the relevant genes
plotMembershipFunctions	Plots the Membership Functions (Low, Medium, High) used to discretize gene expression values
readCSV	Creates an ExpressionSet with an AnnotatedDataFrame from CSV files
rmadataset	A sample ExpressionSet object
setValues-method	Class "HighExpressionLevel"
setValues-method	Class "LowExpressionLevel"
setValues-method	Class "MediumExpressionLevel"
show-method	Class "ExpressionLevel"
show-methods	Prints the slots (attributes) of an ExpressionLevel object
showDiscreteValues	Prints the labels to which the algorithm converts the gene expression values
showFuzzyPatterns	Plots the Fuzzy Patterns corresponding to a class