Conditional Differential Analysis for Flow and Mass Cytometry Experiments

---

Documentation for package ‘CytoGLMM’ version 1.15.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cytoflexmix	Logistic mixture regression
cytoglm	Fit GLM with bootstrap resampling
cytogroup	Group-specific fixed effects model
cytostab	Evaluate parameter stability with respect to gating sheme
cyto_check	Check if input to cytoxxx function have errors
generate_data	Generate dataset for vignettes and simulation studies
is_unpaired	Check if samples match or paired on condition
plot.cytoflexmix	Plot all components of mixture regression
plot.cytoglm	Plot bootstraped coefficients
plot.cytogroup	Plot fixded coefficients of group-specific fixed effects model
plot_coeff	Helper function to plot regression coeffcient
plot_heatmap	Heatmap of median marker expression
plot_lda	LDA on marker expression
plot_mds	MDS on median marker expression
plot_model_selection	Plot model selection to choose number optimal number of clusters
plot_prcomp	Plot PCA of subsampled data using ggplot
print.cytoglm	Extact and print bootstrap GLM fit
remove_samples	Remove samples based on low cell counts
summary.cytoglm	Extact and calculate p-values of bootstrap GLM fit