Forge your own BSgenome data package
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Documentation for package ‘BSgenomeForge’ version 1.8.0
Help Pages
| BSgenomeForge-package | The BSgenomeForge package |
| AdvancedBSgenomeForge | Advanced BSgenomeForge functions |
| BSgenomeDataPkgSeed | Advanced BSgenomeForge functions |
| BSgenomeDataPkgSeed-class | Advanced BSgenomeForge functions |
| BSgenomeForge | The BSgenomeForge package |
| class:BSgenomeDataPkgSeed | Advanced BSgenomeForge functions |
| downloadGenomicSequencesFromNCBI | Download genomic sequences from NCBI |
| downloadGenomicSequencesFromUCSC | Download genomic sequences from UCSC |
| fastaTo2bit | Convert files from FASTA to 2bit |
| forgeBSgenomeDataPkg | Advanced BSgenomeForge functions |
| forgeBSgenomeDataPkg-method | Advanced BSgenomeForge functions |
| forgeBSgenomeDataPkgFromNCBI | Create a BSgenome data package from an NCBI assembly |
| forgeBSgenomeDataPkgFromTwobitFile | Create a BSgenome data package from a 2bit file |
| forgeBSgenomeDataPkgFromUCSC | Create a BSgenome data package from a UCSC genome |
| forgeMaskedBSgenomeDataPkg | Advanced BSgenomeForge functions |
| forgeMaskedBSgenomeDataPkg-method | Advanced BSgenomeForge functions |
| forgeMasksFiles | Advanced BSgenomeForge functions |
| forgeSeqFiles | Advanced BSgenomeForge functions |
| forgeSeqlengthsRdaFile | Advanced BSgenomeForge functions |
| forgeSeqlengthsRdsFile | Advanced BSgenomeForge functions |