Run workflows implemented in Terra/AnVIL workspace

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Documentation for package ‘AnVILWorkflow’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.getAgeMinMax	Apply to the returned value from '.avSampleData' function
.search_keyword	Search keywords in a given metadata table
.tableToString	Summary table into a single string where the column name and the value is separated by 'sep' and columns are separated by 'delim'
AnVILBrowse	Search AnVIL workspaces using keywords
availableAnalysis	Find the available analysis
cloneWorkspace	Clone template workspace
currentInput	Check the current input arguments
findInputName	Find the root entity name
getAllDataTables	Get all the data tables
getAllWorkflows	Collect workflows from all workspaces a user has access to
getAllWorkspaces	Get AnVIL workspaces
getDashboard	Print out Dashboard contents
getData	Creates a metadata table of data from all workspaces provided
getOutput	Download output files from Terra
getWorkflowConfig	Check the workflow configuration
getWorkflows	Creates a metadata table of workflows from all workspaces provided
getWorkspaces	Creates a metadata table of all workspaces
monitorWorkflow	Check the status of submitted jobs
runWorkflow	Launch Terra workflow
setCloudEnv	Setup Google Cloud Account and Project
stopWorkflow	Abort submitted job
updateInput	Update the input