Open a flowJo workspace and return a flowjo_workspace object. Close a flowjo_workspace, destroying the internal representation of the XML document, and freeing the associated memory.

open_flowjo_xml(file, options = 0, sample_names_from = "keyword", ...)

Arguments

file

Full path to the XML flowJo workspace file.

options

xml parsing options passed to xmlTreeParse. See http://xmlsoft.org/html/libxml-parser.html#xmlParserOption for details.

sample_names_from

character specifying where in the XML workspace file to obtain the sample names, either "keyword" for the included $FIL keyword for each sample, or "sampleNode" for the name of the sample node

...

not used

Value

a flowjo_workspace object.

Details

Open an XML flowJo workspace file and return a flowjo_workspace object. The workspace is represented using a XMLInternalDocument object. Close a flowJoWorkpsace after finishing with it. This is necessary to explicitly clean up the C-based representation of the XML tree. (See the XML package).

Examples

if (FALSE) { file<-"myworkspace.xml" ws<-open_flowjo_xml(file); ws }