Package: zellkonverter
Title: Conversion Between scRNA-seq Objects
Version: 1.16.0
Date: 2024-10-18
Authors@R: c(
    person("Luke", "Zappia", , "luke@lazappi.id.au", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-7744-8565")),
    person("Aaron", "Lun", , "infinite.monkeys.with.keyboards@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0002-3564-4813")),
    person("Jack", "Kamm", , "jackkamm@gmail.com", role = "ctb",
           comment = c(ORCID = "0000-0003-2412-756X")),
    person("Robrecht", "Cannoodt", , "rcannood@gmail.com", role = "ctb",
           comment = c(ORCID = "0000-0003-3641-729X", github = "rcannood")),
    person("Gabriel", "Hoffman", , "gabriel.hoffman@mssm.edu", role = "ctb",
           comment = c(ORCID = "0000-0002-0957-0224", github = "GabrielHoffman"))
  )
Description: Provides methods to convert between Python AnnData objects
    and SingleCellExperiment objects. These are primarily intended for use
    by downstream Bioconductor packages that wrap Python methods for
    single-cell data analysis. It also includes functions to read and
    write H5AD files used for saving AnnData objects to disk.
License: MIT + file LICENSE
URL: https://github.com/theislab/zellkonverter
BugReports: https://github.com/theislab/zellkonverter/issues
Imports: basilisk, cli, DelayedArray, Matrix, methods, reticulate,
        S4Vectors, SingleCellExperiment (>= 1.11.6),
        SummarizedExperiment, utils
Suggests: anndata, BiocFileCache, BiocStyle, covr, HDF5Array, knitr,
        pkgload, rhdf5 (>= 2.45.1), rmarkdown, scRNAseq, spelling,
        testthat, withr
VignetteBuilder: knitr
biocViews: SingleCell, DataImport, DataRepresentation
Encoding: UTF-8
Language: en-GB
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
StagedInstall: no
Collate: 'AnnData2SCE.R' 'SCE2AnnData.R' 'ui.R' 'basilisk.R' 'read.R'
        'reticulate.R' 'utils.R' 'validation.R' 'write.R'
        'zellkonverter-package.R'
git_url: https://git.bioconductor.org/packages/zellkonverter
git_branch: RELEASE_3_20
git_last_commit: d492566
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 02:11:14 UTC; biocbuild
Author: Luke Zappia [aut, cre] (<https://orcid.org/0000-0001-7744-8565>),
  Aaron Lun [aut] (<https://orcid.org/0000-0002-3564-4813>),
  Jack Kamm [ctb] (<https://orcid.org/0000-0003-2412-756X>),
  Robrecht Cannoodt [ctb] (<https://orcid.org/0000-0003-3641-729X>,
    rcannood),
  Gabriel Hoffman [ctb] (<https://orcid.org/0000-0002-0957-0224>,
    GabrielHoffman)
Maintainer: Luke Zappia <luke@lazappi.id.au>
Built: R 4.4.1; ; 2024-10-30 11:43:44 UTC; unix
