# Bioconductor on the AnVIL compute environment

## Documentation for package ‘AnVIL’ version 1.18.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

$-method | RESTful services useful for AnVIL developers
.DollarNames.Service | RESTful services useful for AnVIL developers
.gadget_run | Functions to implement AnVIL gadget interfaces
add_libpaths | Utilities for managing library paths
AnVIL-defunct | Defunct AnVIL functionality
av-deprecated | TABLE, DATA, files, bucket, runtime, and disk elements
avbucket | TABLE, DATA, files, bucket, runtime, and disk elements
avdata | TABLE, DATA, files, bucket, runtime, and disk elements
avdata_import | TABLE, DATA, files, bucket, runtime, and disk elements
avdisks | TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_backup | TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_ls | TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_restore | TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_rm | TABLE, DATA, files, bucket, runtime, and disk elements
avruntime | TABLE, DATA, files, bucket, runtime, and disk elements
avruntimes | TABLE, DATA, files, bucket, runtime, and disk elements
avtable_gadget | Graphical user interfaces for common AnVIL operations
avtable_import_status | TABLE, DATA, files, bucket, runtime, and disk elements
avtable_paged | TABLE, DATA, files, bucket, runtime, and disk elements
avworkflow | Workflow configuration
avworkflows | Workflow submissions and file outputs
avworkflows-deprecated | Workflow submissions and file outputs
avworkflow_config-deprecated | Workflow configuration
avworkflow_configurations | Workflow configuration
avworkflow_configuration_get | Workflow configuration
avworkflow_configuration_inputs | Workflow configuration
avworkflow_configuration_outputs | Workflow configuration
avworkflow_configuration_set | Workflow configuration
avworkflow_configuration_template | Workflow configuration
avworkflow_configuration_update | Workflow configuration
avworkflow_files | Workflow submissions and file outputs
avworkflow_gadget | Graphical user interfaces for common AnVIL operations
avworkflow_info | Workflow submissions and file outputs
avworkflow_localize | Workflow submissions and file outputs
avworkflow_name | Workflow configuration
avworkflow_namespace | Workflow configuration
avworkflow_run | Workflow submissions and file outputs
avworkflow_stop | Workflow submissions and file outputs
avworkspace_gadget | Graphical user interfaces for common AnVIL operations
browse_workspace | Graphical user interfaces for common AnVIL operations
delocalize | Copy packages, folders, or files to or from google buckets
Dockstore | RESTful services useful for AnVIL developers
Dockstore-class | RESTful services useful for AnVIL developers
drs-deprecated | DRS (Data Repository Service) URL management
drs_access_url | DRS (Data Repository Service) URL management
drs_cp | DRS (Data Repository Service) URL management
drs_stat | DRS (Data Repository Service) URL management
empty_object | RESTful services useful for AnVIL developers
gcloud | gcloud command line utility interface
gcloud-deprecated | gcloud command line utility interface
gcloud_account | gcloud command line utility interface
gcloud_cmd | gcloud command line utility interface
gcloud_exists | gcloud command line utility interface
gcloud_help | gcloud command line utility interface
gcloud_project | gcloud command line utility interface
gcloud_storage | gcloud command line utility interface
gcloud_storage_buckets | gcloud command line utility interface
gsutil | gsutil command line utility interface
gsutil-deprecated | gsutil command line utility interface
gsutil_cat | gsutil command line utility interface
gsutil_cp | gsutil command line utility interface
gsutil_exists | gsutil command line utility interface
gsutil_help | gsutil command line utility interface
gsutil_ls | gsutil command line utility interface
gsutil_pipe | gsutil command line utility interface
gsutil_requesterpays | gsutil command line utility interface
gsutil_rm | gsutil command line utility interface
gsutil_rsync | gsutil command line utility interface
gsutil_stat | gsutil command line utility interface
Leonardo | RESTful services useful for AnVIL developers
Leonardo-class | RESTful services useful for AnVIL developers
localize | Copy packages, folders, or files to or from google buckets
localize-deprecated | Copy packages, folders, or files to or from google buckets
operations | RESTful services useful for AnVIL developers
operations-method | RESTful services useful for AnVIL developers
print.avworkflow_configuration | Workflow configuration
print.repository_stats | Defunct AnVIL functionality
Rawls | RESTful services useful for AnVIL developers
Rawls-class | RESTful services useful for AnVIL developers
repository_stats | Defunct AnVIL functionality
schemas | RESTful services useful for AnVIL developers
schemas-method | RESTful services useful for AnVIL developers
Service | RESTful service constructor
Service-class | RESTful services useful for AnVIL developers
Services | RESTful services useful for AnVIL developers
show-method | RESTful services useful for AnVIL developers
tags | RESTful services useful for AnVIL developers
TDR | RESTful services useful for AnVIL developers
TDR-class | RESTful services useful for AnVIL developers
Terra | RESTful services useful for AnVIL developers
Terra-class | RESTful services useful for AnVIL developers
utilities | Utilities for managing library paths