Differential Expression Analysis of NanoString nCounter Data
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Documentation for package ‘NanoStringDiff’ version 1.35.0
Help Pages
| NanoStringDiff-package | A short title line describing what the package does |
| createNanoStringSet | NanoStringSet object and constructors |
| createNanoStringSetFromCsv | NanoStringSet object and constructors |
| estNormalizationFactors | estimate normalization factors,include positive size factors, background noise, housekeeping size factors. |
| estNormalizationFactors-method | estimate normalization factors,include positive size factors, background noise, housekeeping size factors. |
| glm.LRT | perform gene-wise likelihood ratio test for NanoString Data |
| glm.LRT-method | perform gene-wise likelihood ratio test for NanoString Data |
| housekeepingControl | Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object. |
| housekeepingControl-method | Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object. |
| housekeepingControl<- | Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object. |
| housekeepingControl<--method | Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object. |
| housekeepingFactor | Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object. |
| housekeepingFactor-method | Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object. |
| housekeepingFactor<- | Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object. |
| housekeepingFactor<--method | Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object. |
| NanoStringData | A real 'NanoStringSet' object. |
| NanoStringDataNormalization | Normalize NanoStringData |
| NanoStringDataNormalization-method | Normalize NanoStringData |
| NanoStringDiff | A short title line describing what the package does |
| NanoStringSet | NanoStringSet object and constructors |
| NanoStringSet-class | NanoStringSet object and constructors |
| negativeControl | Acessor functions for the 'negativeControl' slot in a NanoStringSet object. |
| negativeControl-method | Acessor functions for the 'negativeControl' slot in a NanoStringSet object. |
| negativeControl<- | Acessor functions for the 'negativeControl' slot in a NanoStringSet object. |
| negativeControl<--method | Acessor functions for the 'negativeControl' slot in a NanoStringSet object. |
| negativeFactor | Acessor functions for the 'negativeFactor' slot in a NanoStringSet object. |
| negativeFactor-method | Acessor functions for the 'negativeFactor' slot in a NanoStringSet object. |
| negativeFactor<- | Acessor functions for the 'negativeFactor' slot in a NanoStringSet object. |
| negativeFactor<--method | Acessor functions for the 'negativeFactor' slot in a NanoStringSet object. |
| PlotsPositiveHousekeeping | Plots of positive controls and housekeeping genes |
| PlotsPositiveHousekeeping-method | Plots of positive controls and housekeeping genes |
| positiveControl | Acessor functions for the 'positiveControl' slot in a NanoStringSet object. |
| positiveControl-method | Acessor functions for the 'positiveControl' slot in a NanoStringSet object. |
| positiveControl<- | Acessor functions for the 'positiveControl' slot in a NanoStringSet object. |
| positiveControl<--method | Acessor functions for the 'positiveControl' slot in a NanoStringSet object. |
| positiveFactor | Acessor functions for the 'positiveFactor' slot in a NanoStringSet object. |
| positiveFactor-method | Acessor functions for the 'positiveFactor' slot in a NanoStringSet object. |
| positiveFactor<- | Acessor functions for the 'positiveFactor' slot in a NanoStringSet object. |
| positiveFactor<--method | Acessor functions for the 'positiveFactor' slot in a NanoStringSet object. |