EDASeq-package | Exploratory Data Analysis and Normalization for RNA-Seq data |
barplot-method | Methods for Function 'barplot' in Package 'EDASeq' |
barplot-methods | Methods for Function 'barplot' in Package 'EDASeq' |
betweenLaneNormalization | Methods for Function 'betweenLaneNormalization' in Package 'EDASeq' |
betweenLaneNormalization-method | Methods for Function 'betweenLaneNormalization' in Package 'EDASeq' |
betweenLaneNormalization-methods | Methods for Function 'betweenLaneNormalization' in Package 'EDASeq' |
biasBoxplot | Methods for Function 'biasBoxplot' in Package 'EDASeq' |
biasBoxplot-method | Methods for Function 'biasBoxplot' in Package 'EDASeq' |
biasBoxplot-methods | Methods for Function 'biasBoxplot' in Package 'EDASeq' |
biasPlot | Methods for Function 'biasPlot' in Package 'EDASeq' |
biasPlot-method | Methods for Function 'biasPlot' in Package 'EDASeq' |
biasPlot-methods | Methods for Function 'biasPlot' in Package 'EDASeq' |
boxplot-method | Methods for Function 'boxplot' in Package 'EDASeq' |
boxplot-methods | Methods for Function 'boxplot' in Package 'EDASeq' |
counts-method | "SeqExpressionSet" class for collections of short reads |
counts<--method | "SeqExpressionSet" class for collections of short reads |
EDASeq | Exploratory Data Analysis and Normalization for RNA-Seq data |
exprs-method | "SeqExpressionSet" class for collections of short reads |
exprs<--method | "SeqExpressionSet" class for collections of short reads |
getGeneLengthAndGCContent | Get gene length and GC-content |
initialize-method | "SeqExpressionSet" class for collections of short reads |
MDPlot | Methods for Function 'MDPlot' in Package 'EDASeq' |
MDPlot-method | Methods for Function 'MDPlot' in Package 'EDASeq' |
MDPlot-methods | Methods for Function 'MDPlot' in Package 'EDASeq' |
meanVarPlot | Methods for Function 'meanVarPlot' in Package 'EDASeq' |
meanVarPlot-method | Methods for Function 'meanVarPlot' in Package 'EDASeq' |
meanVarPlot-methods | Methods for Function 'meanVarPlot' in Package 'EDASeq' |
newSeqExpressionSet | Function to create a new 'SeqExpressionSet' object. |
normCounts | "SeqExpressionSet" class for collections of short reads |
normCounts-method | "SeqExpressionSet" class for collections of short reads |
normCounts<- | "SeqExpressionSet" class for collections of short reads |
normCounts<--method | "SeqExpressionSet" class for collections of short reads |
offst | "SeqExpressionSet" class for collections of short reads |
offst-method | "SeqExpressionSet" class for collections of short reads |
offst<- | "SeqExpressionSet" class for collections of short reads |
offst<--method | "SeqExpressionSet" class for collections of short reads |
plot-method | Methods for Function 'plot' in Package 'EDASeq' |
plot-methods | Methods for Function 'plot' in Package 'EDASeq' |
plotNtFrequency | Methods for Function 'plotNtFrequency' in Package 'EDASeq' |
plotNtFrequency-method | Methods for Function 'plotNtFrequency' in Package 'EDASeq' |
plotNtFrequency-methods | Methods for Function 'plotNtFrequency' in Package 'EDASeq' |
plotPCA | Methods for Function 'plotPCA' in Package 'EDASeq' |
plotPCA-method | Methods for Function 'plotPCA' in Package 'EDASeq' |
plotPCA-methods | Methods for Function 'plotPCA' in Package 'EDASeq' |
plotQuality | Methods for Function 'plotQuality' in Package 'EDASeq' |
plotQuality-method | Methods for Function 'plotQuality' in Package 'EDASeq' |
plotQuality-methods | Methods for Function 'plotQuality' in Package 'EDASeq' |
plotRLE | Methods for Function 'plotRLE' in Package 'EDASeq' |
plotRLE-method | Methods for Function 'plotRLE' in Package 'EDASeq' |
plotRLE-methods | Methods for Function 'plotRLE' in Package 'EDASeq' |
SeqExpressionSet-class | "SeqExpressionSet" class for collections of short reads |
withinLaneNormalization | Methods for Function 'withinLaneNormalization' in Package 'EDASeq' |
withinLaneNormalization-method | Methods for Function 'withinLaneNormalization' in Package 'EDASeq' |
withinLaneNormalization-methods | Methods for Function 'withinLaneNormalization' in Package 'EDASeq' |
yeastGC | GC-content of _S. Cerevisiae_ genes |
yeastLength | Length of _S. Cerevisiae_ genes |