# Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification

## Documentation for package ‘EBarrays’ version 2.70.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.

## Help Pages

checkCCV | Various plotting routines in the EBarrays package
checkModel | Various plotting routines in the EBarrays package
checkVarsMar | Various plotting routines in the EBarrays package
checkVarsQQ | Various plotting routines in the EBarrays package
coerce-method | Class of Families to be used in the EBarrays package
crit.fun | Find posterior probability threshold to control FDR
eb.createFamilyGG | Class of Families to be used in the EBarrays package
eb.createFamilyLNN | Class of Families to be used in the EBarrays package
eb.createFamilyLNNMV | Class of Families to be used in the EBarrays package
ebarraysEMfit-class | Implements EM algorithm for gene expression mixture model
ebarraysFamily-class | Class of Families to be used in the EBarrays package
ebarraysPatterns-class | Utility functions for the EBarrays package
ebarraysPostProb-class | Calculates posterior probabilities for expression patterns
ebPatterns | Utility functions for the EBarrays package
ebplots | Various plotting routines in the EBarrays package
emfit | Implements EM algorithm for gene expression mixture model
emfit-method | Implements EM algorithm for gene expression mixture model
gould | A dataset of class matrix
plot.ebarraysEMfit | Various plotting routines in the EBarrays package
plotCluster | Various plotting routines in the EBarrays package
plotMarginal | Various plotting routines in the EBarrays package
postprob | Calculates posterior probabilities for expression patterns
postprob-method | Calculates posterior probabilities for expression patterns
show-method | Class of Families to be used in the EBarrays package
show-method | Implements EM algorithm for gene expression mixture model
show-method | Calculates posterior probabilities for expression patterns
show-method | Utility functions for the EBarrays package
utilities | Utility functions for the EBarrays package