Change history of package procoil:
==================================

The following list highlights the change history of the package.
It only mentions versions in which actual changes have been made
(leaving out automatic version number increments that have been made
within the Bioconductor release cycle without any actual change
of code or documentation).

Version 2.31.1:
- changed e-mail address of maintainer
- updated README.md and formatting of package vignette
- updated references in documentation

Version 2.21.1:
- fix in plot() method

Version 2.1.3:
- fix of citation info file
- fix of inst/NEWS

Version 2.1.2:
- version number bump for technical reasons related to Bioconductor
  build servers

Version 2.1.1:
- version number bump for technical reasons related to Bioconductor
  build servers

Version 2.0.0:
- updated models PrOCoilModel and PrOCoilModelBA that
  have been trained with newer data and up-to-date methods
- general re-design of classes and functions to allow for
  multiple predictions per run; that comes along with
  a more streamlined and more versatile interface how to
  supply sequences and registers to predict().
- predictions and plots are now performed by the 'kebabs'
  package; this led to a major performance increase.
- the integration of the 'kebabs' package also allowed
  for inheriting functions like heatmap() and accessors,
  such as, sequences(), baselines(), and profiles()
- added a fitted() method to allow for easy extraction of
  predictions
- addition of small example model file
  inst/examples/testModel.CCModel
- streamlining/simplification of some man pages
- several corrections and updates of man pages and
  package vignette
- changed vignette building engine from Sweave to knitr
- removal of reference to Git-SVN bridge

Version 1.13.2:
- cleared up package dependencies and namespace
- reference to Bioconductor Git-SVN bridge
- minor corrections to vignette

Version 1.5.1:
- made arguments 'xlab' and 'ylab' accessible to users

Version 1.1.1:
- simplified interface of plot()

Version 1.1.0:
- changed version number to 1.1.0 for consistency with previous
  versions published on the author's institute page
- minor improvements of vignette (accessor functions)
- fixed bug (error when calling predict() on a BString/AAString
  object without previously loading Biostrings)
- fixed bug in predict() for short sequences

Version 0.99.1:
- minor changes to the code chunks in the vignette

Version 0.99.0:
- first version submitted to Bioconductor
