# Identification and classification of plant transcription factors

## Documentation for package ‘planttfhunter’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

annotate_pfam | Annotate proteins sequences with PFAM domains
classification_scheme | Data frame of TF family classification scheme
classify_tfs | Identify TFs and classify them in families
get_tf_counts | Get TF frequencies for each species as a SummarizedExperiment object
gsu | Protein sequences of the algae species Galdieria sulphuraria
gsu_annotation | Domain annotation for the algae species Galdieria sulphuraria The data set was created using the funcion 'annotate_pfam()' in local mode.
gsu_families | TFs families of the algae species Galdieria sulphuraria The data set was created using the funcion 'classify_tfs()'.
hmmer_is_installed | Check if HMMER is installed
tf_counts | TF counts per family in 4 simulated species