add_error	add_error
add_gc_bias	add_gc_bias
add_platform_error	add_platform_error
cdnaf	cdnaf
count_transcripts	count_transcripts
create_read_numbers	create_read_numbers
empirical_density	empirical_density
fpkm_to_counts	fpkm_to_counts
generate_fragments	generate_fragments
getAttributeField	getAttributeField
get_params	get_params
get_reads	get_reads
gtf_dataframe	gtf_dataframe
loessfit1	loessfit1
loessfit2	loessfit2
loessfit3	loessfit3
loessfit4	loessfit4
loessfit5	loessfit5
loessfit6	loessfit6
loessfit7	loessfit7
model1	model1
model2	model2
model3	model3
model4	model4
model5	model5
model6	model6
model7	model7
NB	NB
polyester	polyester
reverse_complement	reverse_complement
rnaf	rnaf
seq_gtf	seq_gtf
simulate_experiment	simulate_experiment
simulate_experiment_countmat	simulate_experiment_countmat
simulate_experiment_empirical	simulate_experiment_empirical
write_reads	write_reads
