Package: chromVAR
Type: Package
Title: Chromatin Variation Across Regions
Version: 1.24.0
Authors@R: c(
    person("Alicia", "Schep", email = "aschep@gmail.com", role = c("aut","cre")),
    person("Jason", "Buenrostro", role = "ctb"),
    person("Caleb", "Lareau", role = "ctb"),
    person("William","Greenleaf", role = "ths"),
    person("Stanford University", role = "cph"))
Description: Determine variation in chromatin accessibility across sets of
    annotations or peaks. Designed primarily for single-cell or sparse chromatin
    accessibility data, e.g. from scATAC-seq or sparse bulk ATAC or DNAse-seq 
    experiments.
License: MIT + file LICENSE
Imports: IRanges, GenomeInfoDb, GenomicRanges, ggplot2, nabor,
        BiocParallel, BiocGenerics, Biostrings, TFBSTools, Rsamtools,
        S4Vectors, methods, Rcpp, grid, plotly, shiny, miniUI, stats,
        utils, graphics, DT, Rtsne, Matrix, SummarizedExperiment,
        RColorBrewer, BSgenome
Depends: R (>= 3.5.0)
Suggests: JASPAR2016, BSgenome.Hsapiens.UCSC.hg19, readr, testthat,
        knitr, rmarkdown, pheatmap, motifmatchr
biocViews: SingleCell, Sequencing, GeneRegulation, ImmunoOncology
LazyData: TRUE
LinkingTo: Rcpp, RcppArmadillo
SystemRequirements: C++11
VignetteBuilder: knitr
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/chromVAR
git_branch: RELEASE_3_18
git_last_commit: e2d61b0
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-29
NeedsCompilation: yes
Packaged: 2023-10-29 20:12:14 UTC; biocbuild
Author: Alicia Schep [aut, cre],
  Jason Buenrostro [ctb],
  Caleb Lareau [ctb],
  William Greenleaf [ths],
  Stanford University [cph]
Maintainer: Alicia Schep <aschep@gmail.com>
Built: R 4.3.1; x86_64-apple-darwin20; 2023-10-30 04:15:56 UTC; unix
