Package: granulator
Type: Package
Title: Rapid benchmarking of methods for *in silico* deconvolution of
        bulk RNA-seq data
Version: 1.10.0
Authors@R: 
  c(person(given = "Sabina",
           family = "Pfister",
           role = c("aut", "cre"),
           email = "sabina.pfister@novartis.com"),
    person(given = "Vincent",
           family = "Kuettel",
           role = "aut"),
    person(given = "Enrico",
           family = "Ferrero",
           role = "aut"))
Description: granulator is an R package for the cell type deconvolution of heterogeneous tissues based on bulk RNA-seq data or single cell RNA-seq expression profiles. The package provides a unified testing interface to rapidly run and benchmark multiple state-of-the-art deconvolution methods. Data for the deconvolution of peripheral blood mononuclear cells (PBMCs) into individual immune cell types is provided as well.
URL: https://github.com/xanibas/granulator
BugReports: https://github.com/xanibas/granulator/issues
Depends: R (>= 4.1)
Suggests: BiocStyle, knitr, rmarkdown, testthat
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
LazyData: FALSE
RoxygenNote: 7.1.1
biocViews: RNASeq, GeneExpression, DifferentialExpression,
        Transcriptomics, SingleCell, StatisticalMethod, Regression
Imports: cowplot, e1071, epiR, dplyr, dtangle, ggplot2, ggplotify,
        grDevices, limSolve, magrittr, MASS, nnls, parallel, pheatmap,
        purrr, rlang, stats, tibble, tidyr, utils
git_url: https://git.bioconductor.org/packages/granulator
git_branch: RELEASE_3_18
git_last_commit: deb1923
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-26
NeedsCompilation: no
Packaged: 2023-10-27 04:36:55 UTC; biocbuild
Author: Sabina Pfister [aut, cre],
  Vincent Kuettel [aut],
  Enrico Ferrero [aut]
Maintainer: Sabina Pfister <sabina.pfister@novartis.com>
Built: R 4.3.1; ; 2023-10-28 18:21:47 UTC; unix
