.assignIndicesToWorkers	scuttle-utils
.bpNotSharedOrUp	scuttle-utils
.checkCountMatrix	scuttle-utils
.guessMinMean	scuttle-utils
.ranksafeQR	scuttle-utils
.splitColsByWorkers	scuttle-utils
.splitRowsByWorkers	scuttle-utils
.splitVectorByWorkers	scuttle-utils
.subset2index	scuttle-utils
.unpackLists	scuttle-utils
addPerCellQC	addPerCellQCMetrics
addPerCellQCMetrics	addPerCellQCMetrics
addPerFeatureQC	addPerCellQCMetrics
addPerFeatureQCMetrics	addPerCellQCMetrics
aggregateAcrossCells	aggregateAcrossCells
aggregateAcrossCells,SingleCellExperiment-method	aggregateAcrossCells
aggregateAcrossCells,SummarizedExperiment-method	aggregateAcrossCells
aggregateAcrossFeatures	aggregateAcrossFeatures
calculateAverage	calculateAverage
calculateAverage,ANY-method	calculateAverage
calculateAverage,SingleCellExperiment-method	calculateAverage
calculateAverage,SummarizedExperiment-method	calculateAverage
calculateCPM	calculateCPM
calculateCPM,ANY-method	calculateCPM
calculateCPM,SingleCellExperiment-method	calculateCPM
calculateCPM,SummarizedExperiment-method	calculateCPM
calculateFPKM	calculateFPKM
calculateTPM	calculateTPM
calculateTPM,ANY-method	calculateTPM
calculateTPM,SingleCellExperiment-method	calculateTPM
calculateTPM,SummarizedExperiment-method	calculateTPM
cleanSizeFactors	cleanSizeFactors
computeGeometricFactors	geometricSizeFactors
computeLibraryFactors	librarySizeFactors
computeMedianFactors	medianSizeFactors
computePooledFactors	computePooledFactors
computeSpikeFactors	computeSpikeFactors
correctGroupSummary	correctGroupSummary
downsampleBatches	downsampleBatches
downsampleMatrix	downsampleMatrix
fitLinearModel	fitLinearModel
geometricSizeFactors	geometricSizeFactors
geometricSizeFactors,ANY-method	geometricSizeFactors
geometricSizeFactors,SummarizedExperiment-method	geometricSizeFactors
isOutlier	isOutlier
librarySizeFactors	librarySizeFactors
librarySizeFactors,ANY-method	librarySizeFactors
librarySizeFactors,SummarizedExperiment-method	librarySizeFactors
logNormCounts	logNormCounts
logNormCounts,SingleCellExperiment-method	logNormCounts
logNormCounts,SummarizedExperiment-method	logNormCounts
makePerCellDF	makePerCellDF
makePerFeatureDF	makePerFeatureDF
medianSizeFactors	medianSizeFactors
medianSizeFactors,ANY-method	medianSizeFactors
medianSizeFactors,SummarizedExperiment-method	medianSizeFactors
mockSCE	mockSCE
normalizeCounts	normalizeCounts
normalizeCounts,ANY-method	normalizeCounts
normalizeCounts,SingleCellExperiment-method	normalizeCounts
normalizeCounts,SummarizedExperiment-method	normalizeCounts
numDetectedAcrossCells	numDetectedAcrossCells
numDetectedAcrossCells,ANY-method	numDetectedAcrossCells
numDetectedAcrossCells,SummarizedExperiment-method	numDetectedAcrossCells
numDetectedAcrossFeatures	numDetectedAcrossFeatures
numDetectedAcrossFeatures,ANY-method	numDetectedAcrossFeatures
numDetectedAcrossFeatures,SummarizedExperiment-method	numDetectedAcrossFeatures
outlier.filter	isOutlier
outlier.filter-class	isOutlier
perCellQCFilters	perCellQCFilters
perCellQCMetrics	perCellQCMetrics
perCellQCMetrics,ANY-method	perCellQCMetrics
perCellQCMetrics,SingleCellExperiment-method	perCellQCMetrics
perCellQCMetrics,SummarizedExperiment-method	perCellQCMetrics
perFeatureQCMetrics	perFeatureQCMetrics
perFeatureQCMetrics,ANY-method	perFeatureQCMetrics
perFeatureQCMetrics,SummarizedExperiment-method	perFeatureQCMetrics
pooledSizeFactors	computePooledFactors
pooledSizeFactors,ANY-method	computePooledFactors
pooledSizeFactors,SummarizedExperiment-method	computePooledFactors
quickPerCellQC	quickPerCellQC
quickPerCellQC,ANY-method	quickPerCellQC
quickPerCellQC,SummarizedExperiment-method	quickPerCellQC
readSparseCounts	readSparseCounts
reexports	reexports
scuttle-pkg	scuttle-pkg
scuttle-utils	scuttle-utils
sumCountsAcrossCells	sumCountsAcrossCells
sumCountsAcrossCells,ANY-method	sumCountsAcrossCells
sumCountsAcrossCells,SummarizedExperiment-method	sumCountsAcrossCells
sumCountsAcrossFeatures	sumCountsAcrossFeatures
sumCountsAcrossFeatures,ANY-method	sumCountsAcrossFeatures
sumCountsAcrossFeatures,SummarizedExperiment-method	sumCountsAcrossFeatures
summarizeAssayByGroup	summarizeAssayByGroup
summarizeAssayByGroup,ANY-method	summarizeAssayByGroup
summarizeAssayByGroup,SummarizedExperiment-method	summarizeAssayByGroup
uniquifyFeatureNames	uniquifyFeatureNames
whichNonZero	reexports
[.outlier.filter	isOutlier
