# Microbiome Data Simulation

## Documentation for package ‘miaSim’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.applyInterType | Generate pairs of interactions according to interaction types
.estimateAFromSimulations | Get the interspecies interaction matrix A using leave-one-out method
.eventTimes | generate a vector of times when events is happening
.generateSimulations | Generate multiple simulations and store them in a list
.getInteractions | Generate interactions according to five types of interactions and their weights
.isPosInt | check whether a number is a positive integer
.rdirichlet | Generate dirichlet random deviates
.replaceByZero | Replace one element with zero in a list.
powerlawA | Interaction matrix with Power-Law network adjacency matrix
randomA | Generate random interaction matrix for GLV model
randomE | Generate random efficiency matrix
simulateConsumerResource | Consumer-resource model simulation
simulateGLV | Generalized Lotka-Volterra (gLV) simulation
simulateHubbell | Hubbell's neutral model simulation
simulateHubbellRates | Hubbell's neutral model simulation applied to time series
simulateHubbellRates-method | Hubbell's neutral model simulation applied to time series
simulateHubbellRates-numeric | Hubbell's neutral model simulation applied to time series
simulateRicker | Generate time series with the Ricker model
simulateSOI | Self-Organised Instability model (SOI) simulation
simulateStochasticLogistic | Stochastic Logistic simulation