Package: ideal
Type: Package
Title: Interactive Differential Expression AnaLysis
Version: 1.24.1
Date: 2023-04-28
Authors@R: c(person("Federico", "Marini", role = c("aut", "cre"), 
    email ="marinif@uni-mainz.de", 
    comment = c(ORCID = '0000-0003-3252-7758')))
Description: This package provides functions for an Interactive
    Differential Expression AnaLysis of RNA-sequencing datasets, to
    extract quickly and effectively information downstream the step
    of differential expression. A Shiny application encapsulates
    the whole package.
License: MIT + file LICENSE
Depends: topGO
Imports: DESeq2, SummarizedExperiment, GenomicRanges, IRanges,
        S4Vectors, ggplot2 (>= 2.0.0), heatmaply, plotly, pheatmap,
        pcaExplorer, IHW, gplots, UpSetR, goseq, stringr, dplyr, limma,
        GOstats, GO.db, AnnotationDbi, shiny (>= 0.12.0),
        shinydashboard, shinyBS, DT, rentrez, rintrojs, rlang, ggrepel,
        knitr, rmarkdown, shinyAce, BiocParallel, grDevices, base64enc,
        methods
Suggests: testthat, BiocStyle, markdown, airway, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg38.knownGene, DEFormats, edgeR
URL: https://github.com/federicomarini/ideal,
        https://federicomarini.github.io/ideal/
BugReports: https://github.com/federicomarini/ideal/issues
biocViews: ImmunoOncology, GeneExpression, DifferentialExpression,
        RNASeq, Sequencing, Visualization, QualityControl, GUI,
        GeneSetEnrichment, ReportWriting, ShinyApps
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/ideal
git_branch: RELEASE_3_17
git_last_commit: 82c7e8b
git_last_commit_date: 2023-04-28
Date/Publication: 2023-06-06
NeedsCompilation: no
Packaged: 2023-06-06 23:03:11 UTC; biocbuild
Author: Federico Marini [aut, cre] (<https://orcid.org/0000-0003-3252-7758>)
Maintainer: Federico Marini <marinif@uni-mainz.de>
Built: R 4.3.0; ; 2023-06-07 13:43:32 UTC; unix
