MSstats GUI for Statistical Anaylsis of Proteomics Experiments

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Documentation for package ‘MSstatsShiny’ version 1.0.10

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

apply_adj	Main PTM adjustment function
dia_skyline_model	Example of Sklyine DDA dataset modeled using MSstats 'groupComparison' function.
dia_skyline_summarized	Example of Sklyine DDA dataset processed using MSstats summarization function.
example_dia_skyline	Example of input Sklyine DDA dataset.
example_skyline_annotation	Example annotation file
groupComparisonPlots2	Plotting funcitonality for QC plots
launch_MSstatsShiny	Run MSstatsShiny Application
lf_model	Main LF modeling function for MSstatsShiny application
lf_summarization_loop	Main LF calculation summarization function for MSstatsShiny application
MSstatsShiny	MSstatsShiny: An R-shiny based package for detecting differencially abundant proteins, integrated with the MSstats family of packages.
QC_check	Quick QC value check
radioTooltip	Custom function to create radio tool tips
tmt_model	Main TMT modeling function for MSstatsShiny application
tmt_pd_model	Example of TMT dataset modeled using MSstatsTMT 'groupComparisonTMT' function.
tmt_pd_summarized	Example of TMT dataset processed using MSstatsTMT summarization function.
tmt_summarization_loop	Main TMT summarization calculation function for MSstatsShiny application
xy_str	Simple function to return coordinates