RegioneReloaded: Multiple Association for Genomic Region Sets


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Documentation for package ‘regioneReloaded’ version 1.0.0

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AlienGenome AlienGenome
AlienRSList_broad AlienRSList_broad
AlienRSList_narrow AlienRSList_narrow
chooseHclustMet chooseHclustMet
createUniverse createUniverse
crosswisePermTest crosswisePermTest
cw_Alien cw_Alien
cw_Alien_RaR cw_Alien_RaR
cw_Alien_ReG cw_Alien_ReG
cw_Alien_ReG_no_Square cw_Alien_ReG_no_Square
cw_Alien_ReR cw_Alien_ReR
genoMatriXeR-class genoMatriXeR Class
getHClust getHClust
getMatrix Get Matrix
getMultiEvaluation getMultiEvaluation
getParameters getParameters
gMXR genoMatriXeR Class
makeCrosswiseMatrix makeCrosswiseMatrix
makeLZMatrix Make Local Z-Score Matrix
mLZS multiLocalZScore Class
mLZ_regA_ReG mLZ_regA_ReG
mLZ_regA_ReG_br mLZ_regA_ReG_br
mLZ_regD_ReG mLZ_regD_ReG
multiLocalZscore multiLocalZscore
multiLocalZScore-class multiLocalZScore Class
plotCrosswiseDimRed plotCrosswiseDimRed
plotCrosswiseMatrix plotCrosswiseMatrix
plotLocalZScoreMatrix Plot Local Z-Score Matrix
plotSingleLZ plotSingleLZ
plotSinglePT plotSinglePT
randomizeRegionsPerc randomizeRegionsPerc
similarRegionSet similar RegionSets