Package: EnrichmentBrowser
Version: 2.28.2
Date: 2023-03-19
Title: Seamless navigation through combined results of set-based and
        network-based enrichment analysis
Author: Ludwig Geistlinger [aut, cre], Gergely Csaba [aut], Mara Santarelli [ctb],
        Mirko Signorelli [ctb], Marcel Ramos [ctb], Levi Waldron [ctb], Ralf Zimmer [aut]
Maintainer: Ludwig Geistlinger <Ludwig_Geistlinger@hms.harvard.edu>
Depends: SummarizedExperiment, graph
Imports: AnnotationDbi, BiocFileCache, BiocManager, GSEABase, GO.db,
        KEGGREST, KEGGgraph, Rgraphviz, S4Vectors, SPIA, edgeR,
        graphite, hwriter, limma, methods, pathview, safe
Suggests: ALL, BiocStyle, ComplexHeatmap, DESeq2, ReportingTools,
        airway, biocGraph, hgu95av2.db, geneplotter, knitr, msigdbr,
        rmarkdown
Description: The EnrichmentBrowser package implements essential functionality 
    for the enrichment analysis of gene expression data. The analysis combines 
    the advantages of set-based and network-based enrichment analysis in order 
    to derive high-confidence gene sets and biological pathways that are 
    differentially regulated in the expression data under investigation. 
    Besides, the package facilitates the visualization and exploration of such 
    sets and pathways.
License: Artistic-2.0
BugReports: https://github.com/lgeistlinger/EnrichmentBrowser/issues
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: ImmunoOncology, Microarray, RNASeq, GeneExpression,
        DifferentialExpression, Pathways, GraphAndNetwork, Network,
        GeneSetEnrichment, NetworkEnrichment, Visualization,
        ReportWriting
RoxygenNote: 7.1.2
git_url: https://git.bioconductor.org/packages/EnrichmentBrowser
git_branch: RELEASE_3_16
git_last_commit: 0db911d
git_last_commit_date: 2023-03-19
Date/Publication: 2023-03-22
NeedsCompilation: no
Packaged: 2023-03-23 09:26:16 UTC; biocbuild
Built: R 4.2.2; ; 2023-03-25 00:33:14 UTC; unix
