Package: Biostrings
Title: Efficient manipulation of biological strings
Description: Memory efficient string containers, string matching
	algorithms, and other utilities, for fast manipulation of large
	biological sequences or sets of sequences.
biocViews: SequenceMatching, Alignment, Sequencing, Genetics,
        DataImport, DataRepresentation, Infrastructure
URL: https://bioconductor.org/packages/Biostrings
BugReports: https://github.com/Bioconductor/Biostrings/issues
Version: 2.66.0
License: Artistic-2.0
Encoding: UTF-8
Author: H. Pagès, P. Aboyoun, R. Gentleman, and S. DebRoy
Maintainer: H. Pagès <hpages.on.github@gmail.com>
Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=
        0.27.12), IRanges (>= 2.31.2), XVector (>= 0.37.1),
        GenomeInfoDb
Imports: methods, utils, grDevices, graphics, stats, crayon
LinkingTo: S4Vectors, IRanges, XVector
Enhances: Rmpi
Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
        1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
        BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,
        hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy
        (>= 1.41.3), affydata (>= 1.11.5), RUnit
LazyLoad: yes
Collate: 00datacache.R utils.R IUPAC_CODE_MAP.R AMINO_ACID_CODE.R
        GENETIC_CODE.R XStringCodec-class.R seqtype.R coloring.R
        XString-class.R XStringSet-class.R XStringSet-comparison.R
        XStringViews-class.R MaskedXString-class.R
        XStringSetList-class.R seqinfo-methods.R xscat.R
        XStringSet-io.R letter.R getSeq.R letterFrequency.R
        dinucleotideFrequencyTest.R chartr.R reverseComplement.R
        translate.R toComplex.R replaceAt.R replaceLetterAt.R
        injectHardMask.R padAndClip.R strsplit-methods.R misc.R
        SparseList-class.R MIndex-class.R lowlevel-matching.R
        match-utils.R matchPattern.R maskMotif.R matchLRPatterns.R
        trimLRPatterns.R matchProbePair.R matchPWM.R findPalindromes.R
        PDict-class.R matchPDict.R XStringPartialMatches-class.R
        XStringQuality-class.R QualityScaledXStringSet.R InDel-class.R
        AlignedXStringSet-class.R PairwiseAlignments-class.R
        PairwiseAlignmentsSingleSubject-class.R PairwiseAlignments-io.R
        align-utils.R pmatchPattern.R pairwiseAlignment.R stringDist.R
        needwunsQS.R MultipleAlignment.R matchprobes.R zzz.R
git_url: https://git.bioconductor.org/packages/Biostrings
git_branch: RELEASE_3_16
git_last_commit: 3470ca7
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-07
NeedsCompilation: yes
Packaged: 2022-11-08 06:55:46 UTC; biocbuild
Built: R 4.2.1; aarch64-apple-darwin20; 2022-11-10 01:04:20 UTC; unix
