PFPRefnet-class {PFP}R Documentation

PFPRefnet-class

Description

An S4 object for storing PFP reference network information.

Value

a object of PFPRefnet class

Slots

network,

object of graphNEL list represents the basic networks.

net_info,

a dataframe which contains the index, id, name, group and species.It contains the information of the pathway networks, whose row number is the same with network.

#'@section method:

  • network, signature(object = "PFPRefnet"): extract networks of PFPRefnet

  • net_info, signature(object = "PFPRefnet"): extract net information of PFPRefnet

  • group, signature(object = "PFPRefnet"): extract group information

  • net_names, signature(object = "PFPRefnet"): the names of basic networks

  • subnet, signature(object = "PFPRefnet"): subset basic networks, e.g. a group of a networks or some networks of some given groups

  • show_net, signature(object = "PFPRefnet"): display methods for S4 classes PFPRefnet, see also show_net

See Also

network-methods, net_info-methods, group-methods, net_names-methods, subnet-methods, show_net-methods,

Examples

data(PFPRefnet_hsa)
PFPRefnet_hsa

[Package PFP version 1.2.0 Index]