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| eegc-package | eegc |
| barplotEnrich | Barplot the enrichResult |
| cate.gene | Categorized genes |
| cate.ratio | Expression Difference ratios of categorized genes |
| categorizeGene | Gene Categorization |
| densityPlot | Quantify Genes and Corresponding ED ratios in Each Category |
| diffGene | Gene Expression Differential Analysis |
| diffgene.genes | Differential genes for three comparisons |
| dotPercentage | Percentage Calculation and Visualization |
| eegc | eegc |
| enrichment | Enrichment Analysis by Hypergeometric Distribution Test |
| expr.filter | Filtered expression data |
| functionEnrich | Funtional Enrichment Analysis |
| goenrich | GO enrichment results |
| grnPlot | Gene Regulatory Network Plot |
| heatmapPlot | Heatmap Plot of Enriched Terms |
| human.gene | Gene regulatory network based human cell/tissue-specific gene sets |
| human.grn | Human cell/tissue-specific gene-gene regulation |
| human.tf | Gene regulatory network based human cell/tissue-specific transcription factor (TF) regulated gene sets |
| markers | Marker genes |
| markerScatter | Scatter Plot for Gene Expression |
| mouse.gene | Gene regulatory network based mouse cell/tissue-specific gene sets |
| mouse.grn | Mouse cell/tissue-specific gene-gene regulation |
| mouse.tf | Gene regulatory network based mouse cell/tissue-specific transcription factor (TF) regulated gene sets |
| networkAnalyze | Network Topological Analysis |
| SandlerFPKM | RNA-seq data in FPKM A data frame containing 16692 gene in 7 samples from paper published by Sandler et.al. in 2014., samples are named from somatic dermal microvascular endothelial cell (DMEC) to induced multipotent haematopoietic progenitor (rEChMPP) cells and primary cord blood (CB) cells. |
| tissueGenes | Cell/Tissue specific gene sets |
| tissueGroup | Tissue mapping to groups |