A Tool for Optimizing Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms

[Up] [Top]

Documentation for package ‘DNABarcodeCompatibility’ version 1.6.0

Help Pages

DNABarcodeCompatibility-package DNABarcodeCompatibility: to find optimised sets of compatible barcodes with least heterogeneity in barcode usage for multiplex experiments performed on next generation sequencing platforms.
distance_filter Select barcode combinations with error correction properties
experiment_design Find a set of barcode combinations with least heterogeneity in barcode usage for single and dual indexing
file_loading_and_checking Loading and checking DNA barcodes.
get_all_combinations Get all compatible combinations.
get_random_combinations Get a large set of compatible combinations.
IlluminaIndexes Barcode dataset from Illumina with features.
IlluminaIndexesRaw Barcode dataset from Illumina.
optimize_combinations Find a set of barcode combinations with least heterogeneity in barcode usage