# Automatic calculation of literature relevance of genes

## Documentation for package ‘PubScore’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.getSimulation_test | Auxiliary function for the test method
.query_pubmed | #' .query_pubmed
all_counts | all_counts
gene2pubmed_db | human genes on gene2pubmed_db
getScore | Retrieve the literature_score attribute
getScore-method | Retrieve the literature_score attribute
get_all_counts | Retrieve the all_counts attribute
get_all_counts-method | Retrieve the all_counts attribute
get_literature_score | get_literature_score
heatmapViz | Retrieve the heatmap attribute
heatmapViz-method | Retrieve the heatmap attribute
hgcn_entrez_reference | hgcn_entrez_reference
initialize-method | initialize
networkViz | Retrieve the network attribute
networkViz-method | Retrieve the network attribute
plot_literature_graph | #'plot_literature_graph
plot_literature_score | plot_literature_score
pubscore | PubScore fundamental analysis
PubScore-class | An S4 class to represent PubScore results
set_all_counts<- | Set the all_counts attribute
set_all_counts<--method | Set the all_counts attribute
test_score | Test the literature enrichment score
test_score-method | Test the literature enrichment score