Exploring, analyzing and visualizing functions utilizing the pcxnData package


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Documentation for package ‘pcxn’ version 2.8.0

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Introduction to pcxn Exploring, analyzing and visualizing functions utilizing the pcxnData package
pcxn Exploring, analyzing and visualizing functions utilizing the pcxnData package
pcxn-class A pcxn object produced by pcxn_explore() or pcxn_analyze(). It holds the corresponding analysis, the data produced by the analysis and the geneset groups involved.
pcxn_analyze Discover correlated pathway/gene sets of a single pathway/gene set or correlation relationships among multiple pathways/gene sets.
pcxn_explore Discover correlated pathway/gene sets of a single pathway/gene set or correlation relationships among multiple pathways/gene sets.
pcxn_gene_members Acquire the gene members of a pathway from the pcxnData package
pcxn_heatmap Draw a heatmap of a pcxn object
pcxn_network Create a network of a pcxn object