mogsa-package |
Multiple omics gene set analysis |
annotate.gs |
Summary annotation information of a gene set |
box.gs.feature |
boxplot of gene set variables across all samples. |
combine |
Combine two objects of class 'mgsa' into one. |
combine-method |
Combine two objects of class 'mgsa' into one. |
combine-methods |
Combine two objects of class 'mgsa' into one. |
decompose.gs.group |
Data-wise or PC-wise decomposition of gene set scores for all observations. |
decompose.gs.ind |
Data-wise or PC-wise decomposition of gene set scores for a single observation. |
getmgsa |
get values in an object of class "mgsa". |
GIS |
calculate gene influential scores of genes in a gene set. |
matpower |
compute the power of a matrix |
mgsa-class |
Class '"mgsa"' |
moa |
Multiple omics data analysis using MFA or STATIS |
moa-class |
Class '"moa"' |
moa.sup-class |
Class '"moa.sup"' |
mogsa |
multiple omics data integration and gene set analysis |
NCI60_4arrays |
Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms |
NCI60_4array_supdata |
supp data for Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms |
pairwise.rv |
pairwise RV coefficients. |
plot-method |
Class '"moa"' |
plot-methods |
~~ Methods for Function 'plot' ~~ |
plotGS |
Plot the gene set space |
prepGraphite |
Prepare pathway gene sets from graphite package |
prepMsigDB |
Conver gmt format file to a list |
prepSupMoa |
Prepare sumpplementary tables for projection by sup.moa or mogsa. |
sup.moa |
Projecting supplementary tables on object of class 'moa-class'. |
wsvd |
Weighted singular value decomposition (SVD) |