# Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

## Documentation for package ‘RforProteomics’ version 1.4.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

downloadData | Download a file
getPackagesInBiocView | Packages in a biocView
getPXD000001mzData | Download the PXD000001 mzTab file
getPXD000001mzTab | Download the PXD000001 mzTab file
getPXD000001mzXML | Download the PXD000001 mzXML file
getThermoHelaPRTC | Dowload Thermo Hela PRTC data
massSpectrometryDataPackages | Proteomics and MS biocView packages
massSpectrometryPackages | Proteomics and MS biocView packages
packageDF | Package descriptions
proteomicsPackages | Proteomics and MS biocView packages
ProtViz | Opens the visualisation vignette
qnt | PXD000001 example MSnSet
RforProteomics | Opens the RforProteomics vignette
shinyMA | MA and expression plots in 'shiny'
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzid | An 'mzIdentML' file