# Robust Analysis of MicroArrays

## Documentation for package ‘rama’ version 1.40.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

arrange.row | Reorder a dataset by increasing row order.
est.shift | Estimate the shift used in the log transformation
fit.model | Robust estimation of microarray intensities with replicates
hiv | Cellular gene expression upon human immunodeficiency virus type 1 infection of CD4+-T-Cell lines
is.row.na | Test if a matrix contains missing values
ls.effect | Compute the least squares estimates of the all the effects of the general model.
mat.mean | Compute the mean and standard deviation of each row in a data matrix
ratio.plot | Plot the estimated log ratios against the overall intensities
weight.plot | Plot the weights of a given array using the spatial location of the genes on the slide