# FABIA: Factor Analysis for Bicluster Acquisition

## Documentation for package ‘fabia’ version 2.0.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

estimateMode | Estimation of the modes of the rows of a matrix
extractBic | Extraction of Biclusters
extractPlot | Plotting of Biclustering Results
fabi | Factor Analysis for Bicluster Acquisition: Laplace Prior (FABI)
fabia | Factor Analysis for Bicluster Acquisition: Laplace Prior (FABIA)
fabiaDemo | Demos for fabia
fabiap | Factor Analysis for Bicluster Acquisition: Post-Projection (FABIAP)
fabias | Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIAS)
fabiasp | Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIASP)
fabiaVersion | Display version info for package and for FABIA
Factorization | The Factorization Class
Factorization-class | The Factorization Class
makeFabiaData | Generation of Bicluster Data
makeFabiaDataBlocks | Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataBlocksPos | Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataPos | Generation of Bicluster Data
matrixImagePlot | Plotting of a Matrix
mfsc | Sparse Matrix Factorization for Bicluster Analysis (MFSC)
nmfdiv | Non-negative Matrix Factorization: Kullback-Leibler Divergence
nmfeu | Non-negative Matrix Factorization: Euclidean Distance
nmfsc | Non-negative Sparse Matrix Factorization
plot | Plot of a Matrix Factorization
plot-method | Plot of a Matrix Factorization
plot-methods | Plot of a Matrix Factorization
plotBicluster | Plotting of a bicluster
projFunc | Projection of a Vector to a Sparse Vector
projFuncPos | Projection of a Vector to a Non-negative Sparse Vector
readSamplesSpfabia | Factor Analysis for Bicluster Acquisition: Read Sparse Matrix Samples
readSpfabiaResult | Factor Analysis for Bicluster Acquisition: Read Results of SpFabia
show | Plot Statistics of a Matrix Factorization
show-method | Plot Statistics of a Matrix Factorization
show-methods | Plot Statistics of a Matrix Factorization
showSelected | Plot Selected Statistics of a Matrix Factorization
showSelected-method | Plot Selected Statistics of a Matrix Factorization
showSelected-methods | Plot Selected Statistics of a Matrix Factorization
spfabia | Factor Analysis for Bicluster Acquisition: SPARSE FABIA
summary | Summary of Matrix Factorization
summary-method | Summary of Matrix Factorization
summary-methods | Summary of Matrix Factorization