source("http://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")

pasillaBamSubset

Subset of BAM files from "Pasilla" experiment

Bioconductor version: 2.13

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

Author: H. Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pasillaBamSubset")

 

PDF		Reference Manual

Details

biocViews	ExperimentData, RNAseqData
Version	0.0.8
License	LGPL
Depends
Imports
Suggests	pasilla
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	GenomicFeatures, GenomicRanges, Rsamtools, TransView

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	pasillaBamSubset_0.0.8.tar.gz
Windows Binary	pasillaBamSubset_0.0.8.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	pasillaBamSubset_0.0.8.tgz
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