# Genome wide annotation for Yeast

## Documentation for package ‘org.Sc.sgd.db’ version 2.8.0

- DESCRIPTION file.

## Help Pages

org.Sc.sgd | Bioconductor annotation data package
org.Sc.sgd.db | Bioconductor annotation data package
org.Sc.sgdALIAS | Map Open Reading Frame (ORF) Identifiers to Alias Gene Names
org.Sc.sgdALIAS2ORF | Map Open Reading Frame (ORF) Identifiers to Alias Gene Names
org.Sc.sgdCHR | Map ORF IDs to Chromosomes
org.Sc.sgdCHRLENGTHS | A named vector for the length of each of the chromosomes
org.Sc.sgdCHRLOC | ORF IDs to Chromosomal Location
org.Sc.sgdCHRLOCEND | ORF IDs to Chromosomal Location
org.Sc.sgdCOMMON2ORF | Map Between Yeast Common Names and ORF Identifiers
org.Sc.sgdDESCRIPTION | An annotation data file that maps Open Reading Frame (ORF) identifiers to textural descriptions of the corresponding genes
org.Sc.sgdENSEMBL | Map Ensembl gene accession numbers with SGD Gene identifiers
org.Sc.sgdENSEMBL2ORF | Map Ensembl gene accession numbers with SGD Gene identifiers
org.Sc.sgdENSEMBLPROT | Map Ensembl protein acession numbers with SGD Gene identifiers
org.Sc.sgdENSEMBLPROT2ORF | Map Ensembl protein acession numbers with SGD Gene identifiers
org.Sc.sgdENSEMBLTRANS | Map Ensembl transcript acession numbers with SGD Gene identifiers
org.Sc.sgdENSEMBLTRANS2ORF | Map Ensembl transcript acession numbers with SGD Gene identifiers
org.Sc.sgdENTREZID | Map Systematic ORF identifiers with Entrez Gene identifiers
org.Sc.sgdENZYME | Map between ORF IDs and Enzyme Commission (EC) Numbers
org.Sc.sgdENZYME2ORF | Map between ORF IDs and Enzyme Commission (EC) Numbers
org.Sc.sgdGENENAME | Map between ORF IDs and Genes
org.Sc.sgdGO | Map between ORF IDs and Gene Ontology (GO)
org.Sc.sgdGO2ALLORFS | Map Between Gene Ontology (GO) Identifiers and all ORF Identifiers in the subtree
org.Sc.sgdGO2ORF | Map between ORF IDs and Gene Ontology (GO)
org.Sc.sgdINTERPRO | Map Yeast Systematic Names to InterPro IDs
org.Sc.sgdMAPCOUNTS | Number of mapped keys for the maps in package org.Sc.sgd.db
org.Sc.sgdORGANISM | The Organism for org.Sc.sgd
org.Sc.sgdPATH | Mappings between ORF identifiers and KEGG pathway identifiers
org.Sc.sgdPATH2ORF | Mappings between ORF identifiers and KEGG pathway identifiers
org.Sc.sgdPFAM | Map Entrez Gene IDs to Pfam IDs
org.Sc.sgdPMID | Map between ORF Identifiers and PubMed Identifiers
org.Sc.sgdPMID2ORF | Map between ORF Identifiers and PubMed Identifiers
org.Sc.sgdREFSEQ | Map between systematic ORF identifiers and RefSeq Identifiers
org.Sc.sgdREJECTORF | Rejected Yeast Genes (ORF)
org.Sc.sgdSGD | Map Systematic ORF identifiers with SGD accession numbers
org.Sc.sgdSMART | Map Yeast ORF Identifiers to SMART IDs
org.Sc.sgdUNIPROT | Map Uniprot accession numbers with Systematic ORF identifiers
org.Sc.sgd_dbconn | Collect information about the package annotation DB
org.Sc.sgd_dbfile | Collect information about the package annotation DB
org.Sc.sgd_dbInfo | Collect information about the package annotation DB
org.Sc.sgd_dbschema | Collect information about the package annotation DB