GenABEL-package	GenABEL-package
add.phdata	add.phdata
add.plot	add.plot
arrange_probabel_phe	arrange_probabel_phe
as.character.gwaa.data	as.character.gwaa.data
as.character.snp.coding	as.character.snp.coding
as.character.snp.data	as.character.snp.data
as.character.snp.strand	as.character.snp.strand
as.data.frame.gwaa.data	as.data.frame.gwaa.data
as.double.gwaa.data	as.double.gwaa.data
as.double.snp.data	as.double.snp.data
as.genotype	as.genotype
as.genotype.gwaa.data	as.genotype.gwaa.data
as.genotype.snp.data	as.genotype.snp.data
as.hsgeno	as.hsgeno
as.hsgeno.gwaa.data	as.hsgeno.gwaa.data
as.hsgeno.snp.data	as.hsgeno.snp.data
autosomal	autosomal
catable	catable
ccfast	ccfast
check.marker	check.marker
check.marker-class	check.marker-class
check.trait	check.trait
chromosome	phdata
coding	phdata
coerce,snp.coding,character-method	snp.coding-class
coerce,snp.data,character-method	snp.data-class
coerce,snp.data,genotype-method	snp.data-class
coerce,snp.data,hsgeno-method	snp.data-class
coerce,snp.data,numeric-method	snp.data-class
coerce,snp.mx,character-method	snp.mx-class
coerce,snp.mx,numeric-method	snp.mx-class
coerce,snp.strand,character-method	snp.strand-class
convert.snp.affymetrix	convert.snp.affymetrix
convert.snp.illumina	convert.snp.illumina
convert.snp.mach	convert.snp.mach
convert.snp.ped	convert.snp.ped
convert.snp.text	convert.snp.text
convert.snp.tped	convert.snp.tped
crnames	crnames
del.phdata	del.phdata
descriptives.marker	descriptives.marker
descriptives.scan	descriptives.scan
descriptives.trait	descriptives.trait
dprfast	dprfast
egscore	egscore
egscore.old	egscore.old
emp.ccfast	emp.ccfast
emp.qtscore	emp.qtscore
estlambda	estlambda
export.impute	export.impute
export.merlin	export.merlin
extract.annotation.impute	extract.annotation.impute
extract.annotation.mach	extract.annotation.mach
formetascore	formetascore
GASurv	GASurv
ge03d2	ge03d2
ge03d2.clean	ge03d2
ge03d2c	ge03d2
ge03d2ex	ge03d2
ge03d2ex.clean	ge03d2
GenABEL	GenABEL-package
grammar	grammar
gtdata	phdata
gwaa.data-class	gwaa.data-class
hom	hom
hom.old	hom.old
HWE.show	HWE.show
ibs	ibs
ibs.old	ibs.old
idnames	phdata
impute2databel	impute2databel
impute2mach	impute2mach
load.gwaa.data	load.gwaa.data
mach2databel	mach2databel
male	phdata
map	phdata
merge.gwaa.data	merge.gwaa.data
merge.snp.data	merge.snp.data
mlreg	mlreg
mlreg.p	mlreg.p
mmscore	mmscore
nids	phdata
npsubtreated	npsubtreated
nsnps	phdata
patch_strand	patch_strand
perid.summary	perid.summary
phdata	phdata
plot, check.marker-method	check.marker-class
plot, scan.gwaa-method	scan.gwaa-class
plot, scan.gwaa.2D-method	scan.gwaa.2D-class
plot.check.marker	plot.check.marker
plot.scan.gwaa	plot.scan.gwaa
plot.scan.gwaa.2D	plot.scan.gwaa.2D
polygenic	polygenic
pop2.ids	ge03d2
qc.nostr	ge03d2
qc.str	ge03d2
qtscore	qtscore
qvaluebh95	qvaluebh95
r2fast	r2fast
r2fast.old	r2fast.old
redundant	redundant
refresh.gwaa.data	refresh.gwaa.data
reg.gwaa	mlreg
rhofast	rhofast
rntransform	rntransform
save.gwaa.data	save.gwaa.data
scan.glm	scan.glm
scan.glm.2D	scan.glm.2D
scan.gwaa-class	scan.gwaa-class
scan.gwaa.2D-class	scan.gwaa.2D-class
scan.haplo	scan.haplo
scan.haplo.2D	scan.haplo.2D
show,gwaa.data-method	gwaa.data-class
show,snp.coding-method	snp.coding-class
show,snp.data-method	snp.data-class
show,snp.mx-method	snp.mx-class
show,snp.strand-method	snp.strand-class
show.ncbi	show.ncbi
snp.coding-class	snp.coding-class
snp.data	snp.data
snp.data-class	snp.data-class
snp.mx-class	snp.mx-class
snp.names	snp.names
snp.strand-class	snp.strand-class
snp.subset	snp.subset
snpnames	phdata
snps.cell-class	snps.cell-class
srdta	srdta
sset	sset
strand	phdata
summary, check.marker-method	check.marker-class
summary,gwaa.data-method	gwaa.data-class
summary,snp.data-method	snp.data-class
summary,snp.mx-method	snp.mx-class
summary.check.marker	summary.check.marker
summary.gwaa.data	summary.gwaa.data
summary.snp.data	summary.snp.data
Xfix	Xfix
ztransform	ztransform
[,gwaa.data,ANY,ANY,ANY-method	gwaa.data-class
[,snp.coding,ANY,missing,missing-method	snp.coding-class
[,snp.data,ANY,ANY,ANY-method	snp.data-class
[,snp.mx,ANY,ANY,ANY-method	snp.mx-class
[,snp.strand,ANY,missing,missing-method	snp.strand-class
