AICc                    Akaike's second-order corrected Information
                        Criterion for small sample sizes
BIC                     Bayesian Information Criterion
Cy0                     Cy0 alternative to crossing points/threshold
                        cycles as in Guescini et al
LR                      Calculation of likelihood ratios for nested
                        models
PRESS                   Allen's PRESS (Prediction Sum-Of-Squares)
                        statistic, aka P-square
RMSE                    Root-mean-squared-error of a fitted model
RSS                     Residual sum-of-squares of a fitted model
Rsq                     R-square value of a fitted model
Rsq.ad                  Adjusted R-square value of a fitted model
Rsq.cor                 R-square derived from correlation of data and
                        fitted values
S27                     PCR data from 15 different testicular biopsies
                        (Roche Lightcycler)
akaike.weights          Calculation of Akaike weights/relative
                        likelihoods/delta-AICs
batchstat               Concatenating or calculating statistics on a
                        'pcrbatch'
batsch1                 qPCR dilution experiments with replicates
                        (Lightcycler 1.0) from Batsch et al
calib                   Calculation of qPCR efficiency by dilution
                        curve analysis with an optional iterative
                        search of the optimal threshold border
calib2                  Calculation of qPCR efficiency by dilution
                        curve analysis and bootstrapping of dilution
                        curve replicates
curvemean               Building a model which averages a batch of qPCR
                        curves
eff                     The amplification efficiency curve of a fitted
                        object
efficiency              Calculation of qPCR efficiency and several
                        other important qPCR parameters
evidence                Evidence ratio for model comparison with AIC or
                        AICc
expcomp                 Comparison of all available sigmodal models by
                        RMSE within the exponential region
expfit                  Calculation of PCR efficiency by fitting an
                        exponential model
fitprob                 The (chi-square) fit probability
guescini1               A qPCR dilution experiment with replicates
                        (Lightcycler 480) from Guescini et al
guescini2               A qPCR experiment with replicates and simulated
                        inhibition (Lightcycler 480) from Guescini et
                        al
l5                      The nonlinear models implemented in qpcR
maxRatio                The maxRatio method as in Shain et al
meanlist                Amalgamation of single data models to a model
                        containing the averaged model
midpoint                Calculation of the exponential region midpoint
                        according to Peirson et al
modlist                 Create nonlinear models from a dataframe and
                        coerce them into a list
mselect                 Selection of the best model by nested
                        F-tests/likelihood ratios/Akaike weights
outlier                 Calculation of qPCR outlier cycles
pcrGOF                  Summarize measures for the goodness-of-fit
pcrbatch                Batch calculation of qPCR efficiency and
                        several other important qPCR parameters with
                        different methods
pcrboot                 Bootstrapping and jackknifing qPCR (and other)
                        data
pcrfit                  Function for qPCR model fitting
pcrimport               Simple qPCR data import function (i.e. from
                        text files or clipboard).
pcropt1                 Combinatorial elimination of plateau and ground
                        phase cycles
pcropt2                 Elimination of qPCR cycles with low (high)
                        impact on fitted parameters
pcrsim                  Simulation of sigmoidal qPCR data with
                        goodness-of-fit analysis for different models
plot.pcrfit             Plotting qPCR data with fitted
                        curves/confidence bands/error bars
predict.pcrfit          Value prediction from a fitted qPCR model
propagate               General error analysis function using
                        Monte-Carlo
                        simulation/permutation/(first-order) error
                        propagation
ratiocalc               Calculation of ratios/propagated
                        errors/confidence intervals/permutation
                        p-values from qPCR runs with/without reference
                        data
replist                 Amalgamation of single data models to a model
                        containing replicates
reps                    qPCR dilution experiment with replicates (Roche
                        Lightcycler)
reps2                   Another qPCR dilution experiment with
                        replicates (Roche Lightcycler)
reps3                   A qPCR dilution experiment with replicates
                        (Stratagene MXPro3000P)
resVar                  Residual variance of a fitted model
resplot                 A residuals bar-plot with colour-coded bars
rutledge                qPCR dilution experiment with replicates and
                        different runs from Rutledge et al (Biorad
                        Opticon)
sliwin                  Calculation of PCR efficiency by the
                        window-of-linearity method
update.pcrfit           Updating and refitting a qPCR model
