crosshybDetector-package	crosshybDetector.package
AAAlignment-class	AAAlignment-class
AAAlphabet-class	AAAlphabet-class
AASequence	AASequence
AASequence-class	AASequence-class
AASequenceList-class	AASequenceList-class
computeTm	computeTm
crosshyb	crosshyb
crosshyb.out	crosshyb.out
crosshyb2xls	crosshyb2xls
crosshyb2xls.putative	crosshyb2xls.putative
crosshybDetector	crosshybDetector.package
crosshybImage	crosshybImage
crosshybMAplot	crosshybMAplot
crosshybMCplot	crosshybMCplot
crosshyb_func	crosshyb_func
EBLOSUM50	EPAM110
EBLOSUM62	EPAM110
EPAM110	EPAM110
extractBadProbes	extractBadProbes
frequency,AASequence-method	AASequence-class
getSeqs	getSeqs
infogrep	readFasta-methods
initialize,AASequence-method	AASequence-class
levels,AAAlphabet-method	AAAlphabet-class
list2ascii	list2ascii
listdist	listdist-methods
listdist,list-method	listdist-methods
listdist-methods	listdist-methods
probeSeq	probeSeq
raw	raw
readFasta	readFasta-methods
readFasta,AASequence-method	readFasta-methods
readFasta,AASequenceList-method	readFasta-methods
readFasta-methods	readFasta-methods
rg2ma	rg2ma
salign	salign-methods
salign,AASequence,AASequence-method	salign-methods
salign,AASequence,AASequenceList-method	salign-methods
salign,AASequenceList,AASequence-method	salign-methods
salign,AASequenceList,NULL-method	salign-methods
salign-methods	salign-methods
selfalign	AASequence-class
selfalign,AASequence,Submatrix-method	AASequence-class
seqgrep	readFasta-methods
show,AAAlignment-method	AAAlignment-class
show,AAAlphabet-method	AAAlphabet-class
show,AASequence-method	AASequence-class
show,AASequenceList-method	AASequenceList-class
show,Submatrix-method	Submatrix-class
subFromEmboss	Submatrix-class
subFromEmboss,Submatrix,character-method	Submatrix-class
Submatrix	Submatrix-class
Submatrix-class	Submatrix-class
summary,AAAlignment-method	AAAlignment-class
testalign	testalign-methods
testalign,AASequence,AASequence-method	testalign-methods
testalign-methods	testalign-methods
[,AASequenceList-method	AASequenceList-class
[<-,AASequenceList-method	AASequenceList-class
[[<-,AASequenceList-method	AASequenceList-class
