caMassClass-package     Processing and Classification of Protein Mass
                        Spectra Data
msc.baseline.subtract   Baseline Subtraction for Mass Spectra Data
msc.biomarkers.fill     Fill Empty Spaces in Biomarker Matrix
msc.biomarkers.read.csv
                        Read and Write biomarker matrix in CSV format
msc.classifier.run      Train and Test Chosen Classifier.
msc.classifier.test     Test a Classifier through Cross-validation
msc.copies.merge        Merge Multiple Copies of Mass Spectra Samples
msc.features.remove     Remove Highly Correlated Features
msc.features.scale      Scale Classification Data
msc.features.select     Reduce Number of Features Prior to
                        Classification
msc.mass.adjust         Perform Normalization and Mass Drift Adjustment
                        for Mass Spectra Data.
msc.mass.cut            Remove Low Mass Portion of the Mass Spectra
                        Data.
msc.peaks.align         Align Peaks of Mass Spectra into a "Biomarker"
                        Matrix
msc.peaks.clust         Clusters Peaks of Mass Spectra
msc.peaks.find          Find Peaks of Mass Spectra
msc.peaks.read.csv      Read and Write Mass Spectra Peaks in CSV Format
msc.peaks.read.mzXML    Read / write calculated peaks heights and
                        positions to/from mzXML Files
msc.preprocess.run      Preprocessing Pipeline of Protein Mass Spectra
msc.project.read        Read and Manage a Batch of Protein Mass Spectra
msc.project.run         Read and Preprocess Protein Mass Spectra
msc.rawMS.read.csv      Read Protein Mass Spectra from CSV files
msc.rawMS.read.mzXML    Read / write raw Mass Spectra to/from mzXML
                        Files
msc.sample.correlation
                        Sample Correlation
read.mzXML              Read and Write mzXML Files
