ImbrieKipp              Imbrie and Kipp foraminifera training set
Pollen                  North American Modern Pollen Database
RMSEP                   Root mean square error of prediction
Stratiplot              Palaeoecological stratigraphic diagrams
analog                  Analogue matching
analogue-package        Analogue methods for palaeoecology
bayesF                  Bayes factors
bootstrap               Bootstrap estimation and errors
bootstrap.wa            Bootstrap estimation and errors for WA models
bootstrapObject         Bootstrap object description
cma                     Close modern analogues
densityplot.residLen    Lattice density plot for residual lengths
deshrink                Deshrinking techniques for WA transfer
                        functions
dissimilarities         Extract dissimilarity coefficients from models
distance                Flexibly calculate dissimilarity or distance
                        measures
fuse                    Fused dissimilarities
getK                    Extract and set the number of analogues
hist.residLen           Histogram plot for residual lengths
histogram.residLen      Lattice histogram plot for residual lengths
join                    Merge species data sets on common columns
                        (species)
logitreg                Logistic regression models for assessing
                        analogues/non-analogues
mat                     Modern Analogue Technique transfer function
                        models
mcarlo                  Monte Carlo simulation of dissimilarities
minDC                   Extract minimum dissimilarities
optima                  Weighted averaging optima and tolerance ranges
panel.Loess             Loess smooths to stratigraphic diagrams
panel.Stratiplot        Panel function for stratigraphic diagrams
performance             Transfer function model performance statistics
plot.dissimilarities    Plots the distribution of extracted
                        dissimilarities
plot.logitreg           Produces plots of analogue logistic regression
                        models
plot.mat                Plot diagnostics for a mat object
plot.mcarlo             Plot Monte Carlo simulated dissimilarity
                        distributions
plot.minDC              Plot of minimum dissimilarity per sample
plot.residLen           Plot method for residual lengths
plot.roc                Plot ROC curves and associated diagnostics
plot.wa                 Plot diagnostics for a weighted averaging model
predict.mat             Predict method for Modern Analogue Technique
                        models
predict.wa              Predict from a weighted average model
reconPlot               Stratigraphic plots of palaeoenvironmental
                        reconstructions
residLen                Squared residual length diagnostics
rlgh                    Round Loch of Glenhead Diatoms
roc                     ROC curve analysis
screeplot.mat           Screeplots of model results
stdError                Standard error of MAT fitted and predicted
                        values
summary.analog          Summarise analogue matching results
summary.bootstrap.mat   Summarise bootstrap resampling for MAT models
summary.cma             Summarise the extraction of close modern
                        analogues
summary.mat             Summarise Modern Analogue Technique models
summary.predict.mat     Summarise MAT model predictions
swapdiat                SWAP sub-fossil diatom and pH training set
swappH                  SWAP sub-fossil diatom and pH training set
tran                    Common data transformations and
                        standardizations
wa                      Weighted averaging transfer functions
