background	background
buildBgGeneList	SubpathwayMiner-internal
convertFile2List	SubpathwayMiner-internal
convertFile2List1	SubpathwayMiner-internal
cutoffAnn	cutoffAnn
dGraph	dGraph
ec2gene	ec2gene
gene2ec	gene2ec
gene2KO	gene2KO
gene2path	gene2path
getAdjECID	SubpathwayMiner-internal
getAdjKOMID	SubpathwayMiner-internal
getAexample	getAexample
getAllKOPathGraph	SubpathwayMiner-internal
getAllPathGraph	SubpathwayMiner-internal
getAnn	getAnn
getDefaultBackground	getDefaultBackground
getDefaultGraph	getDefaultGraph
getDefaultKOPathway	getDefaultKOPathway
getDefaultKOUndirectedGraph	getDefaultKOUndirectedGraph
getDefaultMetabolicPathway	getDefaultMetabolicPathway
getDefaultUndirectedGraph	getDefaultUndirectedGraph
getEnzymeFromGene	getEnzymeFromGene
getGeneFromEnzyme	getGeneFromEnzyme
getGeneFromKO	getGeneFromKO
getGeneFromPathway	getGeneFromPathway
getKcsmpAnn	getKcsmpAnn
getKcSubGraph	getKcSubGraph
getKidFromOid	SubpathwayMiner-internal
getkidoid	SubpathwayMiner-internal
getKOAnn	getKOAnn
getKOFromGene	getKOFromGene
getKOMPathGraph	SubpathwayMiner-internal
getKONodes	SubpathwayMiner-internal
getKOPathGraph	SubpathwayMiner-internal
getMerge	SubpathwayMiner-internal
getMerge1	SubpathwayMiner-internal
getMpAnn	getMpAnn
getNodes	SubpathwayMiner-internal
getOidFromKid	SubpathwayMiner-internal
getOrgAndIdType	getOrgAndIdType
getPathGraph	SubpathwayMiner-internal
getPathName	SubpathwayMiner-internal
getPathwayFromGene	getPathwayFromGene
getPathwayNameFromId	getPathwayNameFromId
gotoKEGG	gotoKEGG
initialize	SubpathwayMiner-internal
isKOMPath	SubpathwayMiner-internal
ke2g	ke2g
keggpathid2name	keggpathid2name
KO2gene	KO2gene
KOuGraph	KOuGraph
kpidList	kpidList
loadKe2g	Ke2gEnvironment
mpidList	mpidList
path2gene	path2gene
plotAnn	plotAnn
plotKOAnn	plotKOAnn
printAnn	printAnn
saveKe2g	Ke2gEnvironment
uGraph	uGraph
updateGraphs	updateGraphs
updateKOGraphs	updateKOGraphs
updateOrgAndIdType	updateOrgAndIdType
