KO2gene                 A list that maps KEGG Orthology (KO) to gene
                        identifiers
KOuGraph                The undirected graph list based on KEGG
                        Orthology (KO) identifiers constructed from
                        KEGG pathways
background              The Background Genes.
cutoffAnn               Get the statistically significantly enriched
                        pathways
dGraph                  Directed graph list based on enzyme commission
                        (EC) numbers constructed from KEGG metabolic
                        pathways
ec2gene                 A list that maps Enzyme Commission (EC) numbers
                        to gene identifiers
gene2KO                 A list that maps gene identifiers to KEGG
                        Orthology (KO)
gene2ec                 A list that maps gene identifiers to Enzyme
                        Commission (EC) numbers
gene2path               A list that maps gene identifiers to KEGG
                        pathway identifiers
getAexample             Get a set of genes
getAnn                  Annotate a set of genes to pathways or
                        sub-pathways based on enzyme commission (EC)
getDefaultBackground    Get the default background genes
getDefaultGraph         Get relationship between KEGG pathways and
                        genes
getDefaultKOPathway     Get an identifier list of the default pathways
                        based on KEGG Orthology (KO)
getDefaultKOUndirectedGraph
                        Get the default undirected graph based on KEGG
                        Orthology
getDefaultMetabolicPathway
                        Get an identifier list of the default metabolic
                        pathways
getDefaultUndirectedGraph
                        Get the default undirected graph based onenzyme
                        commission (EC) numbers
getEnzymeFromGene       Get a list of enzymes from a list of genes
getGeneFromEnzyme       Get a list of genes from a list of enzymes
getGeneFromKO           Get a list of genes from a list of KOs
getGeneFromPathway      Get genes from pathways
getKOAnn                Annotate a set of genes to sub-pathways by
                        using KEGG Orthology (KO)
getKOFromGene           Get a list of KOs from a list of genes
getKcSubGraph           Mine sub-pathways
getKcsmpAnn             Get the sub-pathways annotation and
                        identification of metabolic network
getMpAnn                get annotation informations of metabolic
                        pathways
getOrgAndIdType         Get the type of organism and identifier in the
                        current environment variable
getPathwayFromGene      Get pathwaysfrom genes
getPathwayNameFromId    Get pathway name from identifier
gotoKEGG                Visualize pathways or sub-pathways through
                        linking to the KEGG web site
ke2g                    The environment variable of the system
keggpathid2name         The data that maps KEGG pathway identifiers to
                        names
kpidList                pathway identifier list based on KEGG Orthology
                        (KO)
mpidList                metabolic pathway identifier list
path2gene               A list that maps KEGG pathway identifiers to
                        gene identifiers
plotAnn                 Visualize pathways or sub-pathways based on
                        enzyme commission (EC) numbers
plotKOAnn               Visualize pathways or sub-pathways based on
                        KEGG Orthology (KO)
printAnn                Print the results of pathway annotation and
                        identification
saveKe2g                ke2g environment function
uGraph                  The undirected graph list based on enzyme
                        commission (EC) numbers constructed from KEGG
                        metabolic pathways
updateGraphs            Update graphs constructed from KEGG metabolic
                        pathways
updateKOGraphs          Update graphs based on based on KEGG Orthology
                        (KO) constructed from KEGG pathways
updateOrgAndIdType      Update the organism and the type of gene
                        identifier
