Entry: IsoBHPlot
Aliases: IsoBHPlot
Keywords: hplot
Description: Plot of adjusted p-values using BH or BY adjustment
URL: ../../../library/IsoGene/html/IsoBHPlot.html

Entry: IsoGene-package
Aliases: IsoGene-package IsoGene
Keywords: package
Description: IsoGene
URL: ../../../library/IsoGene/html/IsoGene.package.html

Entry: IsoGene1
Aliases: IsoGene1
Keywords: htest
Description: The five test statistics calculated for both the increasing and decreasing trends
URL: ../../../library/IsoGene/html/IsoGene1.html

Entry: IsoGenem
Aliases: IsoGenem
Keywords: htest
Description: The five test statistics calculated for both the increasing and decreasing trends
URL: ../../../library/IsoGene/html/IsoGenem.html

Entry: IsoGenemSAM
Aliases: IsoGenemSAM
Keywords: htest
Description: The five SAM test statistics calculated for both the increasing and decreasing trends
URL: ../../../library/IsoGene/html/IsoGenemSAM.html

Entry: IsoPlot
Aliases: IsoPlot
Keywords: hplot
Description: IsoPlot
URL: ../../../library/IsoGene/html/IsoPlot.html

Entry: IsoRawp
Aliases: IsoRawp
Keywords: htest
Description: IsoRawp
URL: ../../../library/IsoGene/html/IsoRawp.html

Entry: IsoSAMPlot
Aliases: IsoSAMPlot
Keywords: hplot
Description: Plots produced using the SAM procedure
URL: ../../../library/IsoGene/html/IsoSAMPlot.html

Entry: IsoTestBH
Aliases: IsoTestBH
Keywords: htest
Description: Test of monotonic trends using the five test statistics with BH or BY adjustment
URL: ../../../library/IsoGene/html/IsoTestBH.html

Entry: IsoTestSAM
Aliases: IsoTestSAM
Keywords: htest
Description: Obtaining the list of significant genes using the SAM procedure
URL: ../../../library/IsoGene/html/IsoTestSAM.html

Entry: Isoallfdr
Aliases: Isoallfdr
Keywords: htest
Description: Obtaining the delta table in the SAM procedure
URL: ../../../library/IsoGene/html/Isoallfdr.html

Entry: Isofudge
Aliases: Isofudge
Keywords: htest
Description: Calculation of the fudge factor for the five SAM test statistics in the SAM procedure
URL: ../../../library/IsoGene/html/Isofudge.html

Entry: IsopvaluePlot
Aliases: IsopvaluePlot
Keywords: hplot
Description: Plot of p-values from permutations under increasing or decreasing alternatives
URL: ../../../library/IsoGene/html/IsopvaluePlot.html

Entry: Isoqqstat
Aliases: Isoqqstat
Keywords: htest
Description: Implementation of five SAM test statistics in the SAM procedure
URL: ../../../library/IsoGene/html/Isoqqstat.html

Entry: Isoqval
Aliases: Isoqval
Keywords: htest
Description: Obtaining the list of significant genes using the SAM procedure
URL: ../../../library/IsoGene/html/Isoqval.html

Entry: exampleData
Aliases: exampleData
Keywords: datasets
Description: Dose-response microarray example data
URL: ../../../library/IsoGene/html/exampleData.html
