ActivePathways          ActivePathways
GMT                     Read and Write GMT files
brownsMethod            Merge p-values using Brown's method
columnSignificance      Determine which pathways are found to be
                        significant using each column individually
hypergeometric          Hypergemoetric Test
makeBackground          Make a background list of genes
merge_p_values          Merge a list or matrix of p-values
orderedHypergeometric   Ordered Hypergeometric Test
prepareCytoscape        Prepare files for building an Enrichment Map in
                        Cytoscape
