alakazam-package	alakazam
ABBREV_AA	ABBREV_AA
alakazam	alakazam
aliphatic	aliphatic
aminoAcidProperties	aminoAcidProperties
buildPhylipLineage	buildPhylipLineage
bulk	bulk
calcCoverage	calcCoverage
calcDiversity	calcDiversity
ChangeoClone	ChangeoClone-class
ChangeoClone-class	ChangeoClone-class
charge	charge
collapseDuplicates	collapseDuplicates
countClones	countClones
countGenes	countGenes
countPatterns	countPatterns
DEFAULT_COLORS	DEFAULT_COLORS
DiversityCurve	DiversityCurve-class
DiversityCurve-class	DiversityCurve-class
DiversityTest	DiversityTest-class
DiversityTest-class	DiversityTest-class
DNA_COLORS	DEFAULT_COLORS
estimateAbundance	estimateAbundance
ExampleTrees	ExampleTrees
extractVRegion	extractVRegion
getAAMatrix	getAAMatrix
getAllele	getSegment
getDNAMatrix	getDNAMatrix
getFamily	getSegment
getGene	getSegment
getSegment	getSegment
getSeqDistance	getSeqDistance
getSeqMatrix	getSeqMatrix
gravy	gravy
IG_COLORS	DEFAULT_COLORS
IMGT_REGIONS	IMGT_REGIONS
isValidAASeq	isValidAASeq
IUPAC_AA	IUPAC_CODES
IUPAC_CODES	IUPAC_CODES
IUPAC_DNA	IUPAC_CODES
makeChangeoClone	makeChangeoClone
makeTempDir	makeTempDir
maskSeqEnds	maskSeqEnds
maskSeqGaps	maskSeqGaps
multiggplot	multiggplot
plotAbundance	plotAbundance
plotDiversityCurve	plotDiversityCurve
polar	polar
print,DiversityCurve-method	DiversityCurve-class
print,DiversityTest-method	DiversityTest-class
rarefyDiversity	rarefyDiversity
readChangeoDb	readChangeoDb
stoufferMeta	stoufferMeta
testDiversity	testDiversity
testSeqEqual	testSeqEqual
translateDNA	translateDNA
translateStrings	translateStrings
TR_COLORS	DEFAULT_COLORS
writeChangeoDb	writeChangeoDb
