add_1grams              Add 1-grams
biogram-package         biogram - analysis of biological sequences
                        using n-grams
calc_criterion          Calculate criterion
calc_ig                 Calculate IG for single feature
calc_kl                 Calculate KL divergence of features
code_ngrams             Code n-grams
construct_ngrams        Construct and filter n-grams
count_multigrams        Detect and count multiple n-grams in sequences
count_ngrams            Count n-grams in sequences
count_specified         Count specified n-grams
count_total             Count total number of n-grams
create_feature_target   Create feature according to given contingency
                        matrix
create_ngrams           Get all possible n-Grams
criterion_distribution
                        criterion_distribution class
cut.feature_test        Categorize tested features
decode_ngrams           Decode n-grams
degenerate              Degenerate protein sequence
distr_crit              Compute criterion distribution
fast_crosstable         Very fast 2d cross-tabulation
feature_test            feature_test class
gap_ngrams              Gap n-grams
get_ngrams_ind          Get indices of n-grams
human_cleave            Human signal peptides cleavage sites
is_ngram                Validate n-gram
l2n                     Convert letters to numbers
n2l                     Convert numbers to letters
ngrams2df               n-grams to data frame
plot.criterion_distribution
                        Plot criterion distribution
position_ngrams         Position n-grams
print.feature_test      Print tested features
seq2ngrams              Extract n-grams from sequence
summary.feature_test    Summarize tested features
table_ngrams            Tabulate n-grams
test_features           Permutation test for feature selection
