Entry: FWright.landscape
Aliases: FWright.landscape
Keywords: misc
Description: Calculates Wright's Fixation index at each locus in each population
URL: ../../../library/rmetasim/html/FWright.landscape.html

Entry: Fst.landscape
Aliases: Fst.landscape
Keywords: misc
Description: Calculates population structure statistic for the entire landscape
URL: ../../../library/rmetasim/html/Fst.landscape.html

Entry: allelecount.landscape
Aliases: allelecount.landscape
Keywords: misc
Description: Calculate allele numbers (frequency in the statistical sense) at each locus in each population
URL: ../../../library/rmetasim/html/allelecount.landscape.html

Entry: allelefreq.landscape
Aliases: allelefreq.landscape
Keywords: misc
Description: Calculate allele frequencies at each locus in each population
URL: ../../../library/rmetasim/html/allelefreq.landscape.html

Entry: Components of Simulations
Aliases: advance.landscape carry.landscape extinct.landscape reproduce.landscape survive.landscape
Keywords: misc
Description: Code components to simulate a landscape
URL: ../../../library/rmetasim/html/atomic.simulation.html

Entry: clean.landscape
Aliases: clean.landscape
Keywords: misc
Description: Function to resolve inconsistencies within a landscape
URL: ../../../library/rmetasim/html/clean.landscape.html

Entry: compress.landscape
Aliases: compress.landscape
Keywords: misc
Description: Function to resolve inconsistencies within a landscape, deprecated
URL: ../../../library/rmetasim/html/compress.landscape.html

Entry: demography.landscape
Aliases: demography.landscape
Keywords: misc
Description: Calculate demographic parameters
URL: ../../../library/rmetasim/html/demography.landscape.html

Entry: exp.het.landscape
Aliases: exp.het.landscape
Keywords: misc
Description: Calculate expected heterozygosity
URL: ../../../library/rmetasim/html/exp.het.landscape.html

Entry: is.landscape
Aliases: is.landscape
Keywords: misc
Description: Test whether an object is a (fairly) legitimate landscape
URL: ../../../library/rmetasim/html/is.landscape.html

Entry: island
Aliases: island
Keywords: datasets
Description: rmetasim landscape containing an island migration structure
URL: ../../../library/rmetasim/html/island.html

Entry: landscape.locus
Aliases: landscape.locus
Keywords: misc
Description: return a matrix containing genotypes for a particular locus
URL: ../../../library/rmetasim/html/landscape.locus.html

Entry: landscape.states
Aliases: landscape.states states
Keywords: misc
Description: return a matrix containing actual genotypes for a particular locus
URL: ../../../library/rmetasim/html/landscape.states.html

Entry: landscape.to.rtheta
Aliases: landscape.to.rtheta
Keywords: misc
Description: Converts genetic marker data in a landscape into a format suitable for analysis using ANOVA
URL: ../../../library/rmetasim/html/landscape.to.rtheta.html

Entry: Genetic locus utilities
Aliases: locusvec ploidy
Keywords: misc
Description: Provides convenient summarys of locus characteristics
URL: ../../../library/rmetasim/html/locusutils.html

Entry: modify.landscape.epoch
Aliases: modify.landscape.epoch
Keywords: misc
Description: Modifies one of the landscape's epochs
URL: ../../../library/rmetasim/html/modify.landscape.epoch.html

Entry: new.epoch
Aliases: new.epoch
Keywords: misc
Description: Create an Epoch
URL: ../../../library/rmetasim/html/new.epoch.html

Entry: new.epoch.island
Aliases: new.epoch.island
Keywords: misc
Description: Create an Island Model Epoch
URL: ../../../library/rmetasim/html/new.epoch.island.html

Entry: new.example.landscape
Aliases: new.example.landscape
Keywords: misc
Description: Create a Default Landscape
URL: ../../../library/rmetasim/html/new.example.landscape.html

Entry: new.floatparam.land
Aliases: new.floatparam.land
Keywords: misc
Description: Create a set of floating point parameters
URL: ../../../library/rmetasim/html/new.floatparam.land.html

Entry: new.individuals
Aliases: new.individuals
Keywords: misc
Description: Fill a landscape with individuals
URL: ../../../library/rmetasim/html/new.individuals.html

Entry: new.intparam.land
Aliases: new.intparam.land
Keywords: misc
Description: Create a set of integer parameters
URL: ../../../library/rmetasim/html/new.intparam.land.html

Entry: new.landscape.empty
Aliases: new.landscape.empty
Keywords: misc
Description: Create a Skeletal Landscape
URL: ../../../library/rmetasim/html/new.landscape.empty.html

Entry: new.local.demo
Aliases: new.local.demo
Keywords: misc
Description: Create a Local Demography
URL: ../../../library/rmetasim/html/new.local.demo.html

Entry: new.locus
Aliases: new.locus
Keywords: misc
Description: Add a locus
URL: ../../../library/rmetasim/html/new.locus.html

Entry: new.switchparam.land
Aliases: new.switchparam.land
Keywords: misc
Description: Create a set of boolean parameters
URL: ../../../library/rmetasim/html/new.switchparam.land.html

Entry: obs.het.landscape
Aliases: obs.het.landscape
Keywords: misc
Description: Calculate observed heterozygosity
URL: ../../../library/rmetasim/html/obs.het.landscape.html

Entry: popstruct
Aliases: popstruct
Keywords: misc
Description: Calculates Weir and Cokerham's theta
URL: ../../../library/rmetasim/html/popstruct.html

Entry: populations
Aliases: populations
Keywords: misc
Description: return a vector of population IDs from a landscape
URL: ../../../library/rmetasim/html/populations.html

Entry: read.landscape
Aliases: read.landscape
Keywords: misc
Description: Load a landscape from a file
URL: ../../../library/rmetasim/html/read.landscape.html

Entry: simulate.landscape
Aliases: simulate.landscape
Keywords: misc
Description: Run a simulation for a single landscape through time
URL: ../../../library/rmetasim/html/simulate.landscape.html

Entry: theta.h.landscape
Aliases: theta.h.landscape
Keywords: misc
Description: Calculate theta using heterozygosity
URL: ../../../library/rmetasim/html/theta.h.landscape.html

Entry: theta.k.landscape
Aliases: theta.k.landscape
Keywords: misc
Description: Calculate theta using the number of alleles
URL: ../../../library/rmetasim/html/theta.k.landscape.html

Entry: theta.s.landscape
Aliases: theta.s.landscape
Keywords: misc
Description: Calculate theta using segregating sites
URL: ../../../library/rmetasim/html/theta.s.landscape.html

Entry: write.landscape
Aliases: write.landscape
Keywords: misc
Description: Save a landscape to a file
URL: ../../../library/rmetasim/html/write.landscape.html

Entry: write.landscape.foreign
Aliases: write.landscape.foreign
Keywords: misc
Description: Save a landscape to a file in a foreign format
URL: ../../../library/rmetasim/html/write.landscape.foreign.html
