Entry: ENVI
Aliases: read.ENVI write.ENVI
Keywords: file
Description: Read and write binary data in ENVI format
URL: ../../../library/caMassClass/html/ENVI.html

Entry: LogitBoost
Aliases: LogitBoost
Keywords: classif
Description: LogitBoost Classification Algorithm
URL: ../../../library/caMassClass/html/LogitBoost.html

Entry: base64
Aliases: base64encode base64decode
Keywords: file
Description: Convert R vectors to/from the Base64 format
URL: ../../../library/caMassClass/html/base64.html

Entry: bin2raw
Aliases: bin2raw raw2bin
Keywords: file
Description: Convert R vectors to/from the raw binary format
URL: ../../../library/caMassClass/html/bin2raw.html

Entry: colAUC
Aliases: colAUC
Keywords: univar
Description: Columnwise Area Under ROC Curve (AUC)
URL: ../../../library/caMassClass/html/colAUC.html

Entry: combs
Aliases: combs
Keywords: models
Description: All Combinations of k Elements from Vector v
URL: ../../../library/caMassClass/html/combs.html

Entry: msc.baseline.subtract
Aliases: msc.baseline.subtract
Keywords: ts
Description: Baseline Subtraction for Mass Spectra Data
URL: ../../../library/caMassClass/html/msc.baseline.subtract.html

Entry: msc.biomarkers.fill
Aliases: msc.biomarkers.fill
Keywords: ts
Description: Fill Empty Spaces in Biomarker Matrix
URL: ../../../library/caMassClass/html/msc.biomarkers.fill.html

Entry: msc.biomarkers.read.csv
Aliases: msc.biomarkers.read.csv msc.biomarkers.write.csv
Keywords: ts
Description: Read and Write biomarker matrix in CSV format
URL: ../../../library/caMassClass/html/msc.biomarkers.read.csv.html

Entry: msc.classifier.run
Aliases: msc.classifier.run
Keywords: classif
Description: Train and Test Chosen Classifier.
URL: ../../../library/caMassClass/html/msc.classifier.run.html

Entry: msc.classifier.test
Aliases: msc.classifier.test
Keywords: classif
Description: Test a Classifier through Cross-validation
URL: ../../../library/caMassClass/html/msc.classifier.test.html

Entry: msc.copies.merge
Aliases: msc.copies.merge
Keywords: ts
Description: Merge Multiple Copies of Mass Spectra Samples
URL: ../../../library/caMassClass/html/msc.copies.merge.html

Entry: msc.features.remove
Aliases: msc.features.remove
Keywords: ts classif
Description: Remove Highly Correlated Features
URL: ../../../library/caMassClass/html/msc.features.remove.html

Entry: msc.features.scale
Aliases: msc.features.scale
Keywords: classif
Description: Scale Classification Data
URL: ../../../library/caMassClass/html/msc.features.scale.html

Entry: msc.features.select
Aliases: msc.features.select
Keywords: classif
Description: Reduce Number of Features Prior to Classification
URL: ../../../library/caMassClass/html/msc.features.select.html

Entry: msc.mass.adjust
Aliases: msc.mass.adjust msc.mass.adjust.apply msc.mass.adjust.calc
Keywords: ts
Description: Perform Normalization and Mass Drift Adjustment for Mass Spectra Data.
URL: ../../../library/caMassClass/html/msc.mass.adjust.html

Entry: msc.mass.cut
Aliases: msc.mass.cut
Keywords: ts
Description: Remove Low Mass Portion of the Mass Spectra Data.
URL: ../../../library/caMassClass/html/msc.mass.cut.html

Entry: msc.msfiles.read.csv
Aliases: msc.msfiles.read.csv
Keywords: ts file
Description: Read Protein Mass Spectra from CSV files
URL: ../../../library/caMassClass/html/msc.msfiles.read.csv.html

Entry: msc.peaks.align
Aliases: msc.peaks.align msc.peaks.alignment
Keywords: ts
Description: Align Peaks of Mass Spectra into a "Biomarker" Matrix
URL: ../../../library/caMassClass/html/msc.peaks.align.html

Entry: msc.peaks.clust
Aliases: msc.peaks.clust
Keywords: ts
Description: Clusters Peaks of Mass Spectra
URL: ../../../library/caMassClass/html/msc.peaks.clust.html

Entry: msc.peaks.find
Aliases: msc.peaks.find
Keywords: ts
Description: Find Peaks of Mass Spectra
URL: ../../../library/caMassClass/html/msc.peaks.find.html

Entry: msc.peaks.read.csv
Aliases: msc.peaks.read.csv msc.peaks.write.csv
Keywords: ts
Description: Read and Write Mass Spectra Peaks in CSV Format
URL: ../../../library/caMassClass/html/msc.peaks.read.csv.html

Entry: msc.preprocess.run
Aliases: msc.preprocess.run
Keywords: ts
Description: Preprocessing Pipeline of Protein Mass Spectra
URL: ../../../library/caMassClass/html/msc.preprocess.run.html

Entry: msc.project.read
Aliases: msc.project.read
Keywords: ts file
Description: Read and Manage a Batch of Protein Mass Spectra
URL: ../../../library/caMassClass/html/msc.project.read.html

Entry: msc.project.run
Aliases: msc.project.run
Keywords: ts
Description: Read and Preprocess Protein Mass Spectra
URL: ../../../library/caMassClass/html/msc.project.run.html

Entry: msc.sample.correlation
Aliases: msc.sample.correlation
Keywords: ts
Description: Sample Correlation
URL: ../../../library/caMassClass/html/msc.sample.correlation.html

Entry: msc.sample.split
Aliases: msc.sample.split
Keywords: classif
Description: Split Data into Test and Train Set
URL: ../../../library/caMassClass/html/msc.sample.split.html

Entry: predict.LogitBoost
Aliases: predict.LogitBoost
Keywords: classif
Description: Prediction Based on LogitBoost Classification Algorithm
URL: ../../../library/caMassClass/html/predict.LogitBoost.html

Entry: runfunc
Aliases: runmean runmin runmax runmad runquantile EndRule
Keywords: ts smooth array utilities
Description: Moving Window Analysis of a Vector
URL: ../../../library/caMassClass/html/runfunc.html

Entry: trapz
Aliases: trapz
Keywords: math
Description: Trapezoid Rule Numerical Integration
URL: ../../../library/caMassClass/html/trapz.html
