Package: ape
Version: 1.6
Date: 2005-05-31
Title: Analyses of Phylogenetics and Evolution
Author: Emmanuel Paradis <paradis@isem.univ-montp2.fr>, Korbinian
        Strimmer <strimmer@stat.uni-muenchen.de>, Julien Claude
        <claude@isem.univ-montp2.fr>, Gangolf Jobb
        <gangolf.deletethis@treefinder.de>, Rainer Opgen-Rhein
        <opgen@stat.uni-muenchen.de>, Julien Dutheil
        <julien.dutheil@univ-montp2.fr>, Yvonnick Noel
        <noel@univ-lille3.fr>, Ben Bolker <bolker@zoo.ufl.edu>
Maintainer: Emmanuel Paradis <paradis@isem.univ-montp2.fr>
Depends: R (>= 2.0.0)
Suggests: gee, nlme, lattice
ZipData: no
Description: Ape provides functions for reading, writing, plotting,
        and manipulating phylogenetic trees, analyses of comparative
        data in a phylogenetic framework, analyses of diversification
        and macroevolution, computing distances from allelic and
        nucleotide data, reading nucleotide sequences, and several
        tools such as Mantel's test, computation of minimum spanning
        tree, the population parameter theta based on various
        approaches, nucleotide diversity, generalized skyline plots,
        estimation of absolute evolutionary rates and clock-like trees
        using non-parametric rate smoothing, conversion of APE trees
        to and from hclust objects and for classifying genes in trees
        using the Klastorin-Misawa-Tajima approach.
License: GPL version 2 or newer
Packaged: Fri Jun 3 10:33:04 2005; paradis
Built: R 2.1.1; powerpc-apple-darwin7.9.0; 2005-07-13 12:00:15; unix
