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A C D E G I K L N O P Q R S T U W
| a | Converts amino-acid three-letter code into the one-letter one |
| aaa | Converts amino-acid one-letter code into the three-letter one |
| AAstat | To Get Some Protein Statistics |
| as.SeqAcnucWeb | Sequence coming from an ACNUC data bases located on the web |
| as.SeqFastaAA | AA sequence in Fasta Format |
| as.SeqFastadna | Class for DNA sequence in Fasta Format |
| as.SeqFrag | Class for sub-sequences |
| c2s | conversion of a vector of chars into a string |
| chargaff | Base composition in ssDNA for 7 bacterial DNA |
| choosebank | To select a database structured under ACNUC and located on the web |
| comp | complement a nucleic sequence |
| computePI | To Compute the Theoretical Isoelectric Point |
| count | Composition of dimer/trimer/etc nucleotides |
| dia.bactgensize | Distribution of bacterial genome size from GOLD |
| dia.db.growth | Get the exponential growth of nucleic acid database content |
| dist.alignment | Pairwise Distances from Aligned Protein or DNA/RNA Sequences |
| dotchart.uco | Cleveland plot for codon usage tables |
| ec999 | 999 coding sequences from E. coli |
| EXP | Vectors of coefficients to compute linear forms. |
| gb2fasta | conversion of GenBank file into fasta file |
| gbk2g2 | Conversion of a GenBank format file into a glimmer-like one |
| GC | Calculates the fractional GC content of nucleic acid sequences |
| GC2 | Calculates the fractional GC2 content of nucleic acid sequences |
| GC3 | Calculates the fractional GC3 content of nucleic acid sequences |
| get.db.growth | Get the exponential growth of nucleic acid database content |
| get.ncbi | Bacterial complete genome data from ncbi ftp site |
| getAnnot | Generic Function to obtain annotation for a sequence |
| getAnnots | Generic Function to obtain annotation for a sequence |
| getAttributsocket | Generic Function To obtain the length of a sequence |
| getExon | Generic Function To obtain the Position of a Sequence on the Parent Sequence |
| getFrag | Generic Function to obtain a fragment of a sequence |
| getKeyword | Generic Function to get keyword(s) associated to a sequence |
| getKeywordsocket | Generic Function to get keyword(s) associated to a sequence |
| getLength | Generic Function To obtain the length of a sequence |
| getLocation | Generic Function To obtain the Position of a Sequence on the Parent Sequence |
| getLocationSocket | Generic Function To obtain the Position of a Sequence on the Parent Sequence |
| getName | Generic Function To obtain the name of a sequence |
| getNumber.socket | Generic Function To Get a sequence |
| getSequence | Generic Function To Get a sequence |
| getSequenceSocket | Generic Function To Get a sequence |
| getTrans | Generic Function to translate a sequence |
| getType | To Get Sequence Type |
| invers | invers |
| is.SeqAcnucWeb | Sequence coming from an ACNUC data bases located on the web |
| is.SeqFastaAA | AA sequence in Fasta Format |
| is.SeqFastadna | Class for DNA sequence in Fasta Format |
| is.SeqFrag | Class for sub-sequences |
| kaks | to Get an Estimation of Ka and Ks |
| lseqinr | To see what's inside the package seqinr |
| n2s | function to convert the numeric encoding of a DNA sequence into a vector of characters |
| ncbi.fna.url | Bacterial complete genome data from ncbi ftp site |
| ncbi.gbk.url | Bacterial complete genome data from ncbi ftp site |
| ncbi.ptt.url | Bacterial complete genome data from ncbi ftp site |
| ncbi.stats | Bacterial complete genome data from ncbi ftp site |
| oriloc | Prediction of origin and terminus of replication in bacteria |
| parser.socket | Sequence coming from an ACNUC data bases located on the web |
| plot.SeqAcnucWeb | To Plot Subsequences on the Parent Sequence |
| print.qaw | To get a list of sequence names from an ACNUC data base located on the web |
| query | To get a list of sequence names from an ACNUC data base located on the web |
| read.alignment | Read file in mase, clustal, phylip, fasta or msf format |
| read.fasta | Read file in fasta format |
| readAnnots.socket | Generic Function to obtain annotation for a sequence |
| s2c | conversion of a string into a vector of chars |
| s2n | simple numerical encoding of a DNA sequence. |
| SeqAcnucWeb | Sequence coming from an ACNUC data bases located on the web |
| SeqFastaAA | AA sequence in Fasta Format |
| SeqFastadna | Class for DNA sequence in Fasta Format |
| SeqFrag | Class for sub-sequences |
| SEQINR.UTIL | utility data for seqinr |
| splitseq | split a sequence into sub-sequences |
| summary.SeqFastaAA | AA sequence in Fasta Format |
| summary.SeqFastadna | Class for DNA sequence in Fasta Format |
| tablecode | to plot genetic code as in textbooks |
| translate | Translate nucleic acid sequences |
| uco | Create codon usage table |
| words | To get all words from an alphabet. |
| words.pos | Positions of possibly degenerated motifs within sequences |