carni70                 package:ade4                 R Documentation

_P_h_y_l_o_g_e_n_y _a_n_d _q_u_a_n_t_i_t_a_t_i_v_e _t_r_a_i_t_s _o_f _c_a_r_n_i_v_o_r_a

_D_e_s_c_r_i_p_t_i_o_n:

     This data set describes the phylogeny of 70 carnivora as reported
     by Diniz-Filho and Torres (2002). It also gives the geographic
     range size and body size corresponding to these 70 species.

_U_s_a_g_e:

     data(carni70)

_F_o_r_m_a_t:

     'carni70' is a list containing the 2 following objects : 

     _t_r_e is a character string giving the phylogenetic tree in Newick
          format. 

     _t_a_b is a data frame with 70 species and two traits : size (body
          size (kg)) ; range (geographic range size (km)).    

_S_o_u_r_c_e:

     Diniz-Filho, J. A. F., and N. M. Trres. (2002) Phylogenetic
     comparative methods and the  geographic range size-body size
     relationship in new world terrestrial carnivora. _Evolutionary
     Ecology_, *16*, 351-367.

_E_x_a_m_p_l_e_s:

     ## Not run: 
     data(carni70)
     carni70.phy <- newick2phylog(carni70$tre)
     plot.phylog(carni70.phy)

     size <- scalewt(log(carni70$tab))[,1]
     names(size) <- row.names(carni70$tab)
     symbols.phylog(carni70.phy,size)
     orthogram(size, phylog = carni70.phy)

     yrange <- scalewt(carni70$tab[,2])
     names(yrange) <- row.names(carni70$tab)
     symbols.phylog(carni70.phy,yrange)
     orthogram(yrange, phylog = carni70.phy)

     s.hist(cbind.data.frame(size, yrange), clabel = 0)
     ## End(Not run)

