Entry: EC.3D
Aliases: EC.3D
Keywords: utilities
Description: Expected Euler Characteristic for a 3D Random Field
URL: ../../../library/AnalyzeFMRI/html/EC.3D.html

Entry: GaussSmoothArray
Aliases: GaussSmoothArray
Keywords: utilities
Description: Spatially smooth an array with Gaussian kernel.
URL: ../../../library/AnalyzeFMRI/html/GaussSmoothArray.html

Entry: GaussSmoothKernel
Aliases: GaussSmoothKernel
Keywords: utilities
Description: Calculates a discrete Gaussian smoothing kernel.
URL: ../../../library/AnalyzeFMRI/html/GaussSmoothKernel.html

Entry: N2G.Class.Probability
Aliases: N2G.Class.Probability
Keywords: utilities
Description: Posterior Probabilities for N2G model
URL: ../../../library/AnalyzeFMRI/html/N2G.Class.Probability.html

Entry: N2G.Density
Aliases: N2G.Density
Keywords: utilities
Description: Calculates the density function for the N2G model
URL: ../../../library/AnalyzeFMRI/html/N2G.Density.html

Entry: N2G.Fit
Aliases: N2G.Fit
Keywords: utilities
Description: Optimzation function for N2G model
URL: ../../../library/AnalyzeFMRI/html/N2G.Fit.html

Entry: N2G.Inverse
Aliases: N2G.Inverse
Keywords: utilities
Description: Transform parameters of N2G model back to their real domains
URL: ../../../library/AnalyzeFMRI/html/N2G.Inverse.html

Entry: N2G.Likelihood.Ratio
Aliases: N2G.Likelihood.Ratio
Keywords: utilities
Description: N2G Likelihood Ratio's
URL: ../../../library/AnalyzeFMRI/html/N2G.Likelihood.Ratio.html

Entry: N2G.Likelihood
Aliases: N2G.Likelihood
Keywords: utilities
Description: Calculates the (negative) Likelihood of the N2G model
URL: ../../../library/AnalyzeFMRI/html/N2G.Likelihood.html

Entry: N2G
Aliases: N2G
Keywords: utilities
Description: Fits the N2G model
URL: ../../../library/AnalyzeFMRI/html/N2G.html

Entry: N2G.Region
Aliases: N2G.Region
Keywords: utilities
Description: N2G Normal component interval
URL: ../../../library/AnalyzeFMRI/html/N2G.Region.html

Entry: N2G.Spatial.Mixture
Aliases: N2G.Spatial.Mixture
Keywords: utilities
Description: fMRI Spatial Mixture Modelling
URL: ../../../library/AnalyzeFMRI/html/N2G.Spatial.Mixture.html

Entry: N2G.Transform
Aliases: N2G.Transform
Keywords: utilities
Description: Transform parameters of N2G model so as to lie on the real line.
URL: ../../../library/AnalyzeFMRI/html/N2G.Transform.html

Entry: NonLinearSmoothArray
Aliases: NonLinearSmoothArray
Keywords: utilities
Description: Non-linear spatial smmothing of 3D and 4D arrays.
URL: ../../../library/AnalyzeFMRI/html/NonLinearSmoothArray.html

Entry: Sim.3D.GRF
Aliases: Sim.3D.GRF
Keywords: utilities
Description: Simulate a GRF
URL: ../../../library/AnalyzeFMRI/html/Sim.3D.GRF.html

Entry: Sim.3D.GammaRF
Aliases: Sim.3D.GammaRF
Keywords: utilities
Description: Simulate Gamma distributed Random Field
URL: ../../../library/AnalyzeFMRI/html/Sim.3D.GammaRF.html

Entry: SmoothEst
Aliases: SmoothEst
Keywords: utilities
Description: Estimate the variance-covariance matrix of a Gaussian random field
URL: ../../../library/AnalyzeFMRI/html/SmoothEst.html

Entry: Threshold.Bonferroni
Aliases: Threshold.Bonferroni
Keywords: utilities
Description: Calculates Bonferroni Threshold
URL: ../../../library/AnalyzeFMRI/html/Threshold.Bonferroni.html

Entry: Threshold.FDR
Aliases: Threshold.FDR
Keywords: utilities
Description: False Discovery Rate (FDR) Threshold
URL: ../../../library/AnalyzeFMRI/html/Threshold.FDR.html

Entry: Threshold.RF
Aliases: Threshold.RF
Keywords: utilities
Description: Random Field Theory Thersholds.
URL: ../../../library/AnalyzeFMRI/html/Threshold.RF.html

Entry: cluster.threshold
Aliases: cluster.threshold
Keywords: utilities
Description: Cluster threshold an array.
URL: ../../../library/AnalyzeFMRI/html/cluster.threshold.html

Entry: cov.est
Aliases: cov.est
Keywords: utilities
Description: Estimates the covariance between neighbouring voxels
URL: ../../../library/AnalyzeFMRI/html/cov.est.html

Entry: f.analyze.file.summary
Aliases: f.analyze.file.summary
Keywords: utilities
Description: prints summary of .img file contents
URL: ../../../library/AnalyzeFMRI/html/f.analyze.file.summary.html

Entry: f.analyzeFMRI.gui
Aliases: f.analyzeFMRI.gui
Keywords: utilities
Description: starts AnalyzeFMRI GUI
URL: ../../../library/AnalyzeFMRI/html/f.analyzeIO.gui.html

Entry: f.basic.hdr.list.create
Aliases: f.basic.hdr.list.create
Keywords: utilities
Description: creates basic .hdr list
URL: ../../../library/AnalyzeFMRI/html/f.basic.hdr.list.create.html

Entry: f.ica.fmri
Aliases: f.ica.fmri
Keywords: utilities
Description: Applies Spatial ICA (Independent Component Analysis) to fMRI datasets
URL: ../../../library/AnalyzeFMRI/html/f.ica.fmri.html

Entry: f.ica.fmri.gui
Aliases: f.ica.fmri.gui
Keywords: utilities
Description: tcltk GUI to apply ICA to fMRI datasets
URL: ../../../library/AnalyzeFMRI/html/f.ica.fmri.gui.html

Entry: f.plot.ica.fmri
Aliases: f.plot.ica.fmri
Keywords: utilities
Description: Plots a specified component from the output of f.ica.fmri
URL: ../../../library/AnalyzeFMRI/html/f.plot.ica.fmri.html

Entry: f.plot.ica.fmri.jpg
Aliases: f.plot.ica.fmri.jpg
Keywords: utilities
Description: Plot the components of the ouput of f.ica.fmri to a series of jpeg files
URL: ../../../library/AnalyzeFMRI/html/f.plot.ica.fmri.jpg.html

Entry: f.read.analyze.header
Aliases: f.read.analyze.header
Keywords: utilities
Description: read Analyze header file
URL: ../../../library/AnalyzeFMRI/html/f.read.analyze.header.html

Entry: f.read.analyze.slice
Aliases: f.read.analyze.slice
Keywords: utilities
Description: read one slice from a .img file
URL: ../../../library/AnalyzeFMRI/html/f.read.analyze.slice.html

Entry: f.read.analyze.slice.at.all.timepoints
Aliases: f.read.analyze.slice.at.all.timepoints
Keywords: utilities
Description: reads a slice at all time points from a .img file
URL: ../../../library/AnalyzeFMRI/html/f.read.analyze.slice.at.all.timepoints.html

Entry: f.read.analyze.tpt
Aliases: f.read.analyze.tpt
Keywords: utilities
Description: Read in a volume at one time point
URL: ../../../library/AnalyzeFMRI/html/f.read.analyze.tpt.html

Entry: f.read.analyze.ts
Aliases: f.read.analyze.ts
Keywords: utilities
Description: read in one voxel time series
URL: ../../../library/AnalyzeFMRI/html/f.read.analyze.ts.html

Entry: f.read.analyze.volume
Aliases: f.read.analyze.volume
Keywords: utilities
Description: read whole .img file
URL: ../../../library/AnalyzeFMRI/html/f.read.analyze.volume.html

Entry: f.spectral.summary
Aliases: f.spectral.summary
Keywords: utilities
Description: plots graphical summary of spectral properties of an fMRI dataset
URL: ../../../library/AnalyzeFMRI/html/f.spectral.summary.html

Entry: f.write.analyze
Aliases: f.write.analyze
Keywords: utilities
Description: writes an array to a .img/.hdr pair
URL: ../../../library/AnalyzeFMRI/html/f.write.analyze.html

Entry: f.write.array.to.img.2bytes
Aliases: f.write.array.to.img.2bytes
Keywords: utilities
Description: write array of 2 byte integers
URL: ../../../library/AnalyzeFMRI/html/f.write.array.to.img.2bytes.html

Entry: f.write.array.to.img.8bit
Aliases: f.write.array.to.img.8bit
Keywords: utilities
Description: write array of 1 byte integers
URL: ../../../library/AnalyzeFMRI/html/f.write.array.to.img.8bit.html

Entry: f.write.array.to.img.float
Aliases: f.write.array.to.img.float
Keywords: utilities
Description: write array of 4 byte floats
URL: ../../../library/AnalyzeFMRI/html/f.write.array.to.img.float.html

Entry: f.write.list.to.hdr
Aliases: f.write.list.to.hdr
Keywords: utilities
Description: writes a .hdr file
URL: ../../../library/AnalyzeFMRI/html/f.write.list.to.hdr.html

Entry: model.2.cov.func
Aliases: model.2.cov.func
Keywords: utilities
Description: Calculates covariance from Hartvig Model 2
URL: ../../../library/AnalyzeFMRI/html/model.2.cov.func.html

Entry: model.2.est.gamma
Aliases: model.2.est.gamma
Keywords: utilities
Description: Estimate gamma for Model 2 of Hartvig and Jensen (2000)
URL: ../../../library/AnalyzeFMRI/html/model.2.est.gamma.html
